Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00421 ATGACTTCCTCACACAACAAGCATCCCTTGCCCACTGCCGTTCACTTCTTTAAGATAATCCTCAGAACAAGTCTTGCACATGGAATACTTAAGCTCCCAAAAGATTTTACTACAAAATATGGGGATAGCATGTCAAACCTGGTGTTTCTCAACCCTCCAGATGGCATTGAATGGAAAATATGTTGGACCAAGCTTGATGGCAAGATTTGGTTTGAAAAGGGTTGGAAGGAGTATGCCACATACTATTCCCTGGATCATGGCCACTTGCTGTTGTTTCAATATCAGGGAACTTCTCATTTTGACGTGCACATATTCGACAACAGCGCCATTGAAGTAGACTATCCTTCTTCCCCTGGTACTCGTGATGGAAAGGAAAGACATGTGGAGATTAGTGATGATTCTGTTGAAATTTTGGATGCTCAATTTTCATGCCAGAAGACTAGAGTGAAATCCACAGTGCCATCTCCTCAACCTTCTAAGGAAATGAAATTCGGCCCAACTACAAATGTTGAAAGAAGCCCCAGGGTAAACTTGCATCAGCATGTCCAAACTGGAAGTACTAGCTCTCAAGTAAAAAATTATGAAGCAAGAAGTAGATGGTATGTATGTGATGATGATCATATCATTTTGTGA 633 0.4107 MTSSHNKHPLPTAVHFFKIILRTSLAHGILKLPKDFTTKYGDSMSNLVFLNPPDGIEWKICWTKLDGKIWFEKGWKEYATYYSLDHGHLLLFQYQGTSHFDVHIFDNSAIEVDYPSSPGTRDGKERHVEISDDSVEILDAQFSCQKTRVKSTVPSPQPSKEMKFGPTTNVERSPRVNLHQHVQTGSTSSQVKNYEARSRWYVCDDDHIIL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00421 210 SMART B3_2 16 108 IPR003340 GO:0003677
Gma13g00421 210 Pfam B3 DNA binding domain 23 107 IPR003340 GO:0003677
Gma13g00421 210 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Gma13g00421 210 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 6 178 - -
Gma13g00421 210 CDD B3_DNA 15 106 IPR003340 GO:0003677
Gma13g00421 210 Gene3D - 11 109 IPR015300 -
Gma13g00421 210 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 6 178 IPR039218 -
Gma13g00421 210 SUPERFAMILY DNA-binding pseudobarrel domain 13 108 IPR015300 -
Gma13g00421 210 MobiDBLite consensus disorder prediction 149 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00421 Gma-Chr13 16308716 16309618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00421 8 139 B3 DNA Binding Superfamily AT1G49475 37.324 3.67e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma13g00421 B3 1.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00421 - - gmx:100779965 392.889