Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00413 ATGACTCAGTCAGAGATCGTCTTAGGAAGAAGGAGATTCATCTCTGCAGGTTGTTTTAGAAAAGAAAAAATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTGGGGGGTCCAACAATGGCAGTCATTGCTCTGAAGTGCCCCTCCATTGAAGTGGCTGTTGTTGACATCTCCAAATCCCGGATTGCAGCATGGAACAGTGACCAGCTTCCTATCTATGAGCCAGGCCTTGATGGTGTGGTGAAGCAATGTCGTGGCAAGAACCTTTTCTTCAGCACTGATGTTGAGAAACATGTCTATGAGGCAGACATAGTGTTTGTCTCTGTCAACACCCCGACAAAAACTCGCGGTCTTGGAGCCGGTAAGGCCGCGGATTTAACGTACTGGGAGAGTGCAGCACGCATGATTGCTGATGTATCCAAGAGTGACAAGATTGTGGTGGAGAAATCCACTGTCCCTGTGAAAACTGCTGAGGCCATAGAGAAAATTTTGACTCACAATGGCAAGGGAATCAAGTTCCAAATCCTTTCAAACCCTGAATTCCTTGCTGAGGGAACTGCAATCCAAGATCTTTTCAATCCGGACCGTGTCCTCATTGGAGGCAGGGAGACCCCAGAAGGCCAAAAAGCCATTCAAACATTGAAGGATGTATATGCTCATTGGGTTCCTGAGGGAAGAATCCTAACCACAAACCTGTGGTCTGCTGAACTGTCCAAGCTTGCTGCTAATGCCTTCTTGGCACAGAGAATTTCATCTGTGAATGCTATGTCAGCACTTTGTGAGGCCACTGGGGCAAATGTCACACAAGTGTCCTATGCTGTTGGCACTGACACAAGGATTGGACCAAAGTTCCTGAATTCTAGTGTTGGTTTTGGTGGCTCCTGCTTCCAGAAGGACATCTTGAACCTTGTCTACATCTGTGAGTGTAATGGCCTGCCAGAGGTGGCTGAGTACTGGAAACAAGTGATCAAGATCAATGATTATCAGAAGAGCCGGTTCGTGAACCGTGTTGTTTCGTCGATGTTCAACACAGTTGCAACCAAAAAGATAGCCATTCTGGGGTTTGCATTCAAGAAGGACACTGGGGACACAAGGGAGACACCAGCAATTGATGTGTGCAAGGGACTACTCGGTGACAAGGCACGCCTAAGCATATATGATCCACAAGTCACTGAGGACCAAATTCAGAGGGATTTATGGATGAACAAGTTTGATTGGGACCACCCTATTCACTTGCAGCCAACTAGTCCTACAACTGAGAAGAAAGTTAGTGTGGTTTGGGATGCATACGAGGCAACAAAGGATGCAGATGGTGTCTGCATTCTCACTGAGTGGGATGAGTTCAAGACTCTTGATTATCAGAAGGTGTATGACAACATGAGAAAACCAGCATTTGTTTTTGATGGAAGGAACATTGTGGATGTGGAGAAGCTACGTGATATTGGTTTCATTGTGTACTCAATTGGGAAGCCACTGGATCCATGGCTCAAGGACATGCCAGCTGTGGCATAA 1512 0.4649 MTQSEIVLGRRRFISAGCFRKEKMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVYEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNGKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQTLKDVYAHWVPEGRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVTQVSYAVGTDTRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNTVATKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSPTTEKKVSVVWDAYEATKDADGVCILTEWDEFKTLDYQKVYDNMRKPAFVFDGRNIVDVEKLRDIGFIVYSIGKPLDPWLKDMPAVA 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00413 503 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 24 503 - -
Gma13g00413 503 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 237 IPR036291 -
Gma13g00413 503 SMART UDPG_MGDP_dh_C_a_2_a 351 475 IPR014027 GO:0016616|GO:0051287
Gma13g00413 503 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 233 332 IPR008927 -
Gma13g00413 503 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 351 474 IPR014027 GO:0016616|GO:0051287
Gma13g00413 503 PIRSF UDPglc_GDPman_dh 25 490 IPR017476 GO:0016616
Gma13g00413 503 Gene3D - 232 263 - -
Gma13g00413 503 PIRSF UDPglc_DH_euk 20 503 IPR028356 GO:0003979
Gma13g00413 503 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 338 486 IPR036220 -
Gma13g00413 503 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 233 327 IPR014026 GO:0016616|GO:0051287
Gma13g00413 503 Gene3D - 19 231 - -
Gma13g00413 503 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 26 209 IPR001732 GO:0016616|GO:0051287
Gma13g00413 503 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 24 503 IPR028356 GO:0003979
Gma13g00413 503 Gene3D - 264 499 - -
Gma13g00413 503 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 26 471 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00413 Gma-Chr13 16248898 16252143 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00413 K00012 - gmx:100802280 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00413 13 16248898 16252143 Gma19g00264 19 3574815 3577817 GST
Gma13g00413 13 16248898 16252143 Gma18g02423 18 58306321 58309184 PCT
Gma13g00413 13 16248898 16252143 Gma08g02229 08 21243943 21246732 PCT
Gma18g02423 18 58306321 58309184 Gma13g00413 13 16248898 16252143 PCT
Gma08g02229 08 21243943 21246732 Gma13g00413 13 16248898 16252143 PCT