Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00376 ATGGGGAGGGGAAGAGTGGAGCTCAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAGCAAACCTGGCAAAGAGCTTGAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAAAGGAACCTTCTTGGTGAAGACTTGGGCCCACTAAATACCAAAGATCTTGAGCAGCTTGAGCGGCAACTGGATTCATCTCTCAAGCAAGTGAGGTCCACAAAGACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGGTAGTTAGCATAATTATAGAGTATAGAGTAAATCAACTTTGTGTGTGTCTAACACTTTCAAGCTATTGTTTGATACAGGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGAGCAAAGTATGTCATATGGTACACAAAATGCTCACTCCCAAGGCTTTTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGTTCTGACTACAGGTACAACCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACAACTCAAGCTCAACAAGTCAATGGATTTATTCCTGGATGGATGCTTTGA 825 0.4436 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTNSMLKTLERYQKCSYGAVEVSKPGKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKVVSIIIEYRVNQLCVCLTLSSYCLIQEHMLVEANRSLTMKLEEINSRNQYRQTWEAGEQSMSYGTQNAHSQGFFQPLECNPTLQIGSDYRYNPEASEQQLAATTQAQQVNGFIPGWML 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00376 274 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 161 - -
Gma13g00376 274 PANTHER MADS BOX PROTEIN 182 261 - -
Gma13g00376 274 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Gma13g00376 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma13g00376 274 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gma13g00376 274 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gma13g00376 274 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma13g00376 274 Pfam K-box region 87 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma13g00376 274 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma13g00376 274 PANTHER MADS BOX PROTEIN 1 161 - -
Gma13g00376 274 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma13g00376 274 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma13g00376 274 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma13g00376 274 Coils Coil 124 144 - -
Gma13g00376 274 ProSiteProfiles K-box domain profile. 87 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma13g00376 274 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma13g00376 274 PANTHER MADS-BOX TRANSCRIPTION FACTOR 182 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00376 Gma-Chr13 15680377 15686111 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00376 1 274 MADS-box Gene Family AT5G15800 65.278 9.22e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma13g00376 K-box 6.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00376 K09264 - gmx:100785322 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00376 13 15680377 15686111 Gma19g00324 19 4545909 4551489 GST
Gma13g00376 13 15680377 15686111 Gma18g02483 18 58893997 58899459 PCT
Gma13g00376 13 15680377 15686111 Gma08g02319 08 22430234 22435239 PCT
Gma18g02483 18 58893997 58899459 Gma13g00376 13 15680377 15686111 PCT
Gma08g02319 08 22430234 22435239 Gma13g00376 13 15680377 15686111 PCT