Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00355 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCACCGGCACCTGGTCACATGTCTGCGACACGTGCCGGTCAGCGCCATGCGTACTGTACTGCCATGCAGACTCAGCATACCTTTGCTCATCCTGCGATGCTCGTGTCCATGCGGCTAACCGTGTGGCCTCAAGACACGAGCGTGTGTGGGTGTGCGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTATGCAAAGCCGACGCAGCTTCTCTTTGTTCTTCCTGTGATGCTGACATTCACTCAGCAAACCCTCTCGCTAGCCGCCACCACCGCGTGCCCATTCTCCCGATCTCTGGTTCCCTCTTCGGGGAACCAGAGCATGAACGCGTGTACGCGTTCGTGAATGAAGTGGAAGCGGAGGAGGAAGAGGAAGAGGTTTTTGATGAGTATGATGAGGTTGAAGCAGCTTCGTGGTTGTTGCCACATCCTATGAAAAATGATAAAATTGACGAGAATGGTGGTGATGAGGGTTTTTTGTTTGGTGATGAGTATTTCGACAACCTTGTTGATTGTAACTCATGTGGTCACAATAACAACCAGTTTAGCAACGTTTATGATCAGCACCAGCAGAATTACAGCAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCCGCAGCATTTTCAACCGGGTTTGGACTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCGATGGATGTTGGTGTTGTACTCGAATCAACAATAAGTGACATCTCAATGTCCCACTCAAAGTCGCCAATAGGGACAACTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTCACACCAATGGACAGAGAGGCAAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGAAAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGTCGTTTTGCAAAGAGAACCGATGTAGAAGCTGAAGTGGACCAGATGTTCTCCACAACACTATTCACTGAAGTTGGAGGTAGCATTTTTCCCACTTTCTAG 1086 0.4862 MLKEGTNNVGGSTGTWSHVCDTCRSAPCVLYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGSLFGEPEHERVYAFVNEVEAEEEEEEVFDEYDEVEAASWLLPHPMKNDKIDENGGDEGFLFGDEYFDNLVDCNSCGHNNNQFSNVYDQHQQNYSNTVPQNYAVVPVQVPQHFQPGLDFDSSKAGFSYDGSLSQSVSVSSMDVGVVLESTISDISMSHSKSPIGTTDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLFTEVGGSIFPTF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00355 361 ProSiteProfiles CCT domain profile. 292 334 IPR010402 GO:0005515
Gma13g00355 361 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Gma13g00355 361 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Gma13g00355 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 361 IPR045281 GO:0009909
Gma13g00355 361 Pfam CCT motif 292 334 IPR010402 GO:0005515
Gma13g00355 361 SMART bboxneu5 15 62 IPR000315 GO:0008270
Gma13g00355 361 SMART bboxneu5 63 105 IPR000315 GO:0008270
Gma13g00355 361 CDD Bbox1_BBX-like 19 62 - -
Gma13g00355 361 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Gma13g00355 361 CDD Bbox1_BBX-like 62 105 - -
Gma13g00355 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 16 361 - -
Gma13g00355 361 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00355 Gma-Chr13 15352410 15354828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00355 1 361 C2C2-CO-like Transcription Factor Family AT3G02380 53.846 1.59e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma13g00355 zf-B_box 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00355 - - gmx:100782635 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00355 13 15352410 15354828 Gma19g00366 19 5574524 5576590 GST
Gma13g00355 13 15352410 15354828 Gma18g02517 18 59250461 59252810 PCT
Gma13g00355 13 15352410 15354828 Gma08g02363 08 23095162 23097808 PCT
Gma18g02517 18 59250461 59252810 Gma13g00355 13 15352410 15354828 PCT
Gma08g02363 08 23095162 23097808 Gma13g00355 13 15352410 15354828 PCT