Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00354 ATGGGGAAGCCAAGAGGAGAAGCGATTCTTTGTTTTTTATTTTTCTTCTGGTTTTGGAGCTCTTCGAATGCTTTGCTTTCTCCAAAGGGTGTGAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGCTTCTCTTGTGGATCCTCATGGTATTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGCAGCTGGAACATGGTCACATGTTCCCCTGAGAATCTTGTTATTAGCCTGGGCATTCCCAGTCAAAATTTGTCTGGCACTCTATCTCCAAGCATAGGAAACCTAACAAATCTTCAGACTGTGGTGCTACAGAATAACAACATAACTGGACCAATCCCTTCAGAGCTAGGAAAACTTTCCAAGCTTCAAACACTTGATCTCTCTGATAACTTCTTAAGTGGGGAAATTCCCCCCTCTTTGGGTCATCTGAGAAGACTACAATACTTGAGGCTTAATAATAACAGTTTTGATGGAGAATGCCCAGAGTCACTAGCTAACATGGCACAGCTTGCTTTCTTTGACTTGTCTTACAACAATCTGAGTGGCCCTATACCTAAAATTTTGGCCAAATCATTCAGTATTGTAGGAAACCCCCTAGTTTGCGCTACAGAAAAAGAAAAAAATTGCCATGGGATGACACTTATGCCTATGCCAATGAACTTGAACAATACTGAGGATGCTTCACCATCAGGCAGAAAAAAGGCTCACAAAATGGCCATAGCCTTTGGTTTAAGTTTGGGATGCCTCAGCTTGATAGTTCTTGGTGTTGGACTTGTTCTATGGAGGAGGCACAAGCATAAACAACAGGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTTCATTTAAGAGAACTCCAGATTGCTACCAAGAACTTCAGCAACAAAAACATTCTTGGAAAGGGTGGTTTCGGAAATGTCTACAAGGGAATTCTCTCAGATGGCACTCTTTTAGCAGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGATATACAATTTCAGACTGAAGTTGAAATGATCAGCTTGGCAGTGCACAGAAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGGTAAGCCAGTGTTGGACTGGGGCACAAGGAAGCAAATTGCCTTAGGAGCAGCAAGGGGACTACTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCATAGAGATGTGAAGGCTGCAAACATATTGCTTGATGACTATTGTGAGGCAGTGGTAGGAGATTTTGGGCTGGCAAAGCTTTTAGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGTACAGTTGGGCATATTGCACCAGAGTACCTTTCCACAGGGCAATCTTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCAAAGGGCACTAGAATTTGGCAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAACTTCATCAAGAGAAGAAGCTTGAGTTGCTCGTTGACAAGGATCTCAAGACCAACTATGACCGGATTGAGCTTGAGGAAATTGTTCAAGTGGCACTCTTGTGCACACAATATCTTCCGGGCCACAGGCCCAAAATGTCCGAAGTTGTACGCATGCTTGAAGGTGATGGGCTGGCAGAGAAATGGGAAGCCTCACAAAGTGCTGACACTTCTAACTGCAAACCACAAGAACTCTCTTCATCAGATAGGTATTCTGACCTCACTGATGATTCTTCATTGTTAGTCCAAGCCATGGAACTCTCAGGCCCTAGGTGA 1875 0.4347 MGKPRGEAILCFLFFFWFWSSSNALLSPKGVNFEVQALMGIKASLVDPHGILDNWDGDAVDPCSWNMVTCSPENLVISLGIPSQNLSGTLSPSIGNLTNLQTVVLQNNNITGPIPSELGKLSKLQTLDLSDNFLSGEIPPSLGHLRRLQYLRLNNNSFDGECPESLANMAQLAFFDLSYNNLSGPIPKILAKSFSIVGNPLVCATEKEKNCHGMTLMPMPMNLNNTEDASPSGRKKAHKMAIAFGLSLGCLSLIVLGVGLVLWRRHKHKQQAFFDVKDRHHEEVYLGNLKRFHLRELQIATKNFSNKNILGKGGFGNVYKGILSDGTLLAVKRLKDGNAIGGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKLHQEKKLELLVDKDLKTNYDRIELEEIVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQSADTSNCKPQELSSSDRYSDLTDDSSLLVQAMELSGPR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00354 624 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 5 624 - -
Gma13g00354 624 MobiDBLite consensus disorder prediction 584 610 - -
Gma13g00354 624 SUPERFAMILY L domain-like 34 196 - -
Gma13g00354 624 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Gma13g00354 624 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Gma13g00354 624 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
Gma13g00354 624 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Gma13g00354 624 SMART serkin_6 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00354 624 SUPERFAMILY Protein kinase-like (PK-like) 281 574 IPR011009 -
Gma13g00354 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Gma13g00354 624 ProSiteProfiles Protein kinase domain profile. 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00354 624 Pfam Protein kinase domain 305 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00354 624 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Gma13g00354 624 MobiDBLite consensus disorder prediction 581 610 - -
Gma13g00354 624 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Gma13g00354 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00354 Gma-Chr13 15330292 15334380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00354 7 624 Receptor kinase-like Gene Family AT5G16000 76.837 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gma13g00354 Pkinase 3.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00354 - - gmx:100806650 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00354 13 15330292 15334380 Gma19g00368 19 5644164 5648005 GST
Gma13g00354 13 15330292 15334380 Gma18g02518 18 59266739 59270848 PCT
Gma13g00354 13 15330292 15334380 Gma08g02364 08 23120440 23124452 PCT
Gma18g02518 18 59266739 59270848 Gma13g00354 13 15330292 15334380 PCT
Gma08g02364 08 23120440 23124452 Gma13g00354 13 15330292 15334380 PCT