Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00333 ATGGATCCCTCTCGCCGTGCCCCACGCGCCGTGATCGACCCCGTCCCGAAGATCCGGCAAGTGGGGTTCTTCGCCCCGCCCGAGAGCTCCCAGTCGGGTCCTCTCGACCCGACCCACTCCTCTCCCCCAATCTCCAACTCCCTCTCCCCCGTCATGATCCCGCCCCCGCGCCACCTCTCCGACAACCTCCTCCTCCACGACCCCCGCCCTGCCGCCTCTCCCCTCTCCTCCGCCTCCGCCGTCGCCGCTGCCGGAAGCGGAAACTCCTTCGACTCCGCGGACTTCTTCCCCGCCCCACTCTCTCCCGCGATGCCGTCTTCTTCGTACTCCAGCAGGATTGCCACCGGCGGCGCCAGCGACGGTGGGTACTTCAAGGGGAACGGCGCCGGCGGAAAGTTGGCGGCGTCGTCGTTTCCCCGCGGAGGATTCGACTTGACCGCGATGAAGGCGGCGAGCCTTGTGCCGGCGAGCGAGTTGACTACGGTTTCCGTGGTGAATGATTCGCTCGGGATTCCTGAAAAAGAAAAAGGAAACAAAACAGGAGGGTCAGCAGTGGAAGTGAAGGACCAACCTAATAGTTCAAAGCAGCAGAAGCCAAAACCGAAAACCTCAAAAGCTGAAAGACGTGCACTCCAAGAAGCTCAACGGGCTGCAAAGGCTGCTGAAAAAGGTGAAGGAAGTAAGGCATCTGGAACTGCGGCTTCAACGAATCCAAAACCAGCTAAAGCTGTAAAGCCTGCACAGAAAGTTGATAATGCAGCAATTGCAGCCTCTGAAAAGAAGGGAGGTGAGATTCCACCAGAAAAGGATAGAAAGAAAGATGCTCCTCAACCACGCTTGCAGTATGACGACAAGAGCCGAGTGGAGAAAGCTAAACGTCGTGCAGTGGTGAAACAAACTGAAGCTAGGAACAGAGTTGAGTTGTTCAGGCATTTACCACAATATGAACGTGGGAGTCAGCTTCCAGATCTTGAGGCAAAGTTTTTCCATCTTTCTCCAGTGCACCCTCTTGTTTATAAGGTGGGCTTGCAGTATCTAACTGGAGATATATCTGGTGGCAATGCTCGTTGCATTGCAATGCTTCAAGCATTTCAAGAGGCCATCAAAGACTACAAGGTTCCACCTGAGAAGACTCTTGTGAGAGACTTGACAGCAAAAATTGGTAGTTATGTATCATTTCTTATTGAGTGTCGACCTCTGTCAATCAGCATGGGAAATGCAATTAGATTTCTCAAAAGTCGGATAGCCAAGCTACCTTTGACCTTGTCTGAATCAGAAGCAAAAGCTTCTCTCGAGTCAGATATTGAGTGTTTTATAAGTGAAAAGATTATACTTGCCAACAAGGTGATAGTGAAGCATGCTGTCACCAAAATAAGAGATGGTGATGTTCTTCTAACTTTTGGGTCTTCATCTGCTGTTGAAATGATACTATTGCATGCACATGAGTTGGGAAGACAGTTTCGTGTTGTGGTAGTTGACTCTCGTCCGAAGCTTAGAGGGCAACTTTTACTTCGCCGGCTTGTGGAGAACGGTCTTAGCTGTACATACACTCATATAAATGCTGTTTCCTACATAATGCACGAAGTTACTCGAGTTTTTCTGGGTGCATCAGCAGTTTTGTCTAATGGAACAGTATATTCAAGAGTGGGGACTGCATGTGTTGCAATGGTTGCTCATGCATTCCGTGTACCTGTCATAGTATGTTGTGAGGCCTATAAATTTCATGAACGGGTACAGTTGGATTCAATATGCTCAAATGAACTTGGCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTCAAACACTTGGATGGCTGGGCCAATATTGAAAATCTGCAACTTTTAAATCTGGTTTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTATGGCATGGTTCCCCCCACAAGTGTGCCTGTAATTGTAAGAGAATATGGGAGAGAACAGGTACTAGTTAGCTCATCTTCGTTGTCTCTTACAATCAAGGTTTTCGATTGCGGTCATGGTTGTAGTTTTGTATCAATCCTATATTGCAGAAAATTGCGAACAAATGCAACTAATGCTAATGTGGCTGCAATTACAGTCACAAAGACCCCCAAAACCTTGACATTTCTTCTTGGCTTAGAGGAGGCTATACTAGTCCTAGGGCTTCAGGGTTCCACTTCCCTCCTCTGCAATTTCTTCTCCGCCACGCCCTACGACGTCGTTCGCCGTAAGCTCTCTTCGTTTCTCTTAAGAAGAGAAAAGGATGAAACGGAGGATTTGCAAGATGGGTTGAAGTTGAGTGTGGTCACTGAGGAAATGAGTGGAGGAGTGCTTGCTGAGAATGGTTGTATCTCTCTTGAGGATGGGAGCCTCAAAAGAAGCATTGAGACTGTTGAAACATCTGTATCAGGTGCTAAAAGAGCTCGGATTACAGTTGATGAAGATCAACCTTCAGTTCATTTTACGTATAATTCCCTAACAAGAGCTAGTAGACAGAAGCTTCAGGAACTGCTGCAGCAATGGTCAGAATGGCATGCTAAACATGTTTTGTCATCCAATGATGCTAGCGAAGTGTTGGAATCCGGTGAGGAGACATTTTTTCCTGCTCTGCATGTTGGACTTGAAAAGACATCTGCTGTGTCATTCTGGATGGAGAACCAAACAAGAAAAGATAAGAACAAAGATTTCATTCCTTTAGCTGATAATTCTGTGCCTCTATATGATCGTGGATATACTTTGGGATTGACTTCAGCTGATGGTTCAAGTAATGTGGATGGTGGTCTGGAGATTATTGATgctgctgctaggtgtttcaattgtggttcttacaaccactcattgagagagtgtccaaggccccgtgacAACACTGCAGTCAATAATGCTCGCAATAAACACAAGTCCCGACGGAACCAGAATTCTTCTTCCCGGAATCCGACTCGTTATTATCAGAATTCTCCTGCTGGAAAGTATGATGGTTTGAGGCCAGGTGCTCTGGATGATGCAACACGTCAACTTTTGGGCTTGGGGGAGCTTGATCCACCTCCGTGGCTCAACAGAATGCGAGAATTAGGATACCCACCTGGATATCTTGATGTGGATGATGAGGATCAGCCTTCCGGCATTACAATATACACTGATAGGGAGATTGCTGACCAAGAGGATGGGGAAATTATGGAAGCGGATGCTTCCAAACCAAAGCGTAAAAAGACTGTCAAATTTCCTGGAATAAATGCTCCTATTCCAGATAATGCTGATGAGAGATTGTGGGGCACTAGGGCTGGACCCTCGAGTTCAGATATTTCAAGAAACTTGTCATTGCCACAGCACAGGTCGAATTATAGTACTGATTATGGCAGCCGTGGATATCATCGCGAACATAGATTAGGGGATCTTAGGGATGATGGTCCACCAGGGGACCCTGGACATAGTTCATCTAAGTTCAGTTTTCATCCTAGGTTTGGTGGCCATGATTCTGCACTAAGAAGTCCTTCAATGGCAAGGTCTCAATCTGACAGGAGTAGAAGTCCGATGCATGATGAAGAATCCCCAATGCCTTTTTCTTTCCATTCTCTTCATTATTCGTCTTCAGAGAGGCATTTTTCACCCTTGGACCCAGATTCTGGTAGACCAGGGAGTCGGACCTCTGAAAGTATGTATTATGACAGGGACCGCGATCTTTCATCTCGAGTTAAGGACAGGCCAGATGATCGTCACCACCGCAGTTGGAGGTGA 3741 0.4616 MDPSRRAPRAVIDPVPKIRQVGFFAPPESSQSGPLDPTHSSPPISNSLSPVMIPPPRHLSDNLLLHDPRPAASPLSSASAVAAAGSGNSFDSADFFPAPLSPAMPSSSYSSRIATGGASDGGYFKGNGAGGKLAASSFPRGGFDLTAMKAASLVPASELTTVSVVNDSLGIPEKEKGNKTGGSAVEVKDQPNSSKQQKPKPKTSKAERRALQEAQRAAKAAEKGEGSKASGTAASTNPKPAKAVKPAQKVDNAAIAASEKKGGEIPPEKDRKKDAPQPRLQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYERGSQLPDLEAKFFHLSPVHPLVYKVGLQYLTGDISGGNARCIAMLQAFQEAIKDYKVPPEKTLVRDLTAKIGSYVSFLIECRPLSISMGNAIRFLKSRIAKLPLTLSESEAKASLESDIECFISEKIILANKVIVKHAVTKIRDGDVLLTFGSSSAVEMILLHAHELGRQFRVVVVDSRPKLRGQLLLRRLVENGLSCTYTHINAVSYIMHEVTRVFLGASAVLSNGTVYSRVGTACVAMVAHAFRVPVIVCCEAYKFHERVQLDSICSNELGNPDVISNVLGREDVKHLDGWANIENLQLLNLVYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGREQVLVSSSSLSLTIKVFDCGHGCSFVSILYCRKLRTNATNANVAAITVTKTPKTLTFLLGLEEAILVLGLQGSTSLLCNFFSATPYDVVRRKLSSFLLRREKDETEDLQDGLKLSVVTEEMSGGVLAENGCISLEDGSLKRSIETVETSVSGAKRARITVDEDQPSVHFTYNSLTRASRQKLQELLQQWSEWHAKHVLSSNDASEVLESGEETFFPALHVGLEKTSAVSFWMENQTRKDKNKDFIPLADNSVPLYDRGYTLGLTSADGSSNVDGGLEIIDAAARCFNCGSYNHSLRECPRPRDNTAVNNARNKHKSRRNQNSSSRNPTRYYQNSPAGKYDGLRPGALDDATRQLLGLGELDPPPWLNRMRELGYPPGYLDVDDEDQPSGITIYTDREIADQEDGEIMEADASKPKRKKTVKFPGINAPIPDNADERLWGTRAGPSSSDISRNLSLPQHRSNYSTDYGSRGYHREHRLGDLRDDGPPGDPGHSSSKFSFHPRFGGHDSALRSPSMARSQSDRSRSPMHDEESPMPFSFHSLHYSSSERHFSPLDPDSGRPGSRTSESMYYDRDRDLSSRVKDRPDDRHHRSWR 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00333 1246 MobiDBLite consensus disorder prediction 200 223 - -
Gma13g00333 1246 SUPERFAMILY NagB/RpiA/CoA transferase-like 334 652 IPR037171 -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 262 296 - -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 1219 1246 - -
Gma13g00333 1246 ProSiteProfiles Zinc finger CCHC-type profile. 938 954 IPR001878 GO:0003676|GO:0008270
Gma13g00333 1246 MobiDBLite consensus disorder prediction 18 85 - -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 25 47 - -
Gma13g00333 1246 SMART testneu 993 1046 IPR006568 -
Gma13g00333 1246 Pfam PSP 997 1034 IPR006568 -
Gma13g00333 1246 Coils Coil 204 224 - -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 951 999 - -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 162 296 - -
Gma13g00333 1246 PANTHER TRANSLATION INITIATION FACTOR EIF-2B DELTA SUBUNIT 1 658 - -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 1054 1071 - -
Gma13g00333 1246 Pfam Initiation factor 2 subunit family 350 642 IPR000649 GO:0044237
Gma13g00333 1246 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 658 - -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 1097 1121 - -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 185 199 - -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 1054 1246 - -
Gma13g00333 1246 Gene3D - 446 652 IPR042529 -
Gma13g00333 1246 MobiDBLite consensus disorder prediction 1122 1142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00333 Gma-Chr13 15005231 15026090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00333 4 659 Eukaryotic Initiation Factors Gene Family AT5G38640 65.630 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00333 K03680 - gmx:100818977 1184.09