Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00314 ATGGAGAGAAGGAAAGTACTTATAAAAAAAATCTCTGAATTTTCCACCTTGTGTGGAGTTGAAGCATGCTTGATTGTGTATGATGATGGGAATGGTGACATTGAACCAGTGACTTGTCCCAAAGACCCTGTATTGGCACACTCCATACTTCAAAACTATGAGTTTCAAAAGAATCAGAGACCTCCCAAGAAGTTTGGTATTCAGGACTTTGTTGAGGATAGGAAGAACATCATTGAAGCTGAGATTTCCAAAGTGCATAAAGAGATCACCAACATCAAGTATCCAACTTCGGATCCAAGTTTCATAAACATGGAAGAGGATCAATTGAGGGCCTTCATTGCTCTGGTGGATGCTAAGATTAGGACCTGTGATCATTCTTTGAAAAACATGCATCAAAGTGAAGCCAACTTCATGCAAAACATGGCTTGGGGAAGTGCTTCCTCCTCCCATCCTACTCCTATGGAGCCACTTAATAATAATGGGAGGGTGGATGTTACAAACTCAATAGATCAGGTTTATGAAGCTATGCAACTAGTTGATGCTCCCTTTAGTTACATTCCAGACATGGTTCAGAAAAGTTTTAATTGCTTGCAAAACATCTCTCAAAGCCAACCCATACTTGATGTTGAGGATGAGATGGTAGGTTTTAGTAATAGAGTTGATGTGTCACTGGATACAACTAATCAAATTGCTGACTTGTTGGACTGGTTTGATGGACCTATTATTGGTTGGTCTGATCTTGTGGATTGGACTAGTCAACCTGATGAATCTCAGAATGAGCAACAAGGTGGAGGAGATTTGGATGGATTTCAAACAGAATGCTATAATCTGAATTTCTGA 840 0.3976 MERRKVLIKKISEFSTLCGVEACLIVYDDGNGDIEPVTCPKDPVLAHSILQNYEFQKNQRPPKKFGIQDFVEDRKNIIEAEISKVHKEITNIKYPTSDPSFINMEEDQLRAFIALVDAKIRTCDHSLKNMHQSEANFMQNMAWGSASSSHPTPMEPLNNNGRVDVTNSIDQVYEAMQLVDAPFSYIPDMVQKSFNCLQNISQSQPILDVEDEMVGFSNRVDVSLDTTNQIADLLDWFDGPIIGWSDLVDWTSQPDESQNEQQGGGDLDGFQTECYNLNF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00314 279 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 30 IPR002100 GO:0003677|GO:0046983
Gma13g00314 279 MobiDBLite consensus disorder prediction 144 163 - -
Gma13g00314 279 PANTHER PROTEIN, PUTATIVE-RELATED 1 235 - -
Gma13g00314 279 Gene3D - 1 77 IPR036879 GO:0003677|GO:0046983
Gma13g00314 279 PANTHER MADS BOX PROTEIN 1 235 - -
Gma13g00314 279 SUPERFAMILY SRF-like 2 40 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00314 Gma-Chr13 14648964 14649803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00314 2 121 Type I MADS-box Gene Family AT5G55690 34.677 7.10e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma13g00314 SRF-TF 9.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00314 - - gmx:100777824 575.089