Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00283 ATGTATGCTTTCTCTCTAAACATGGTGCTGCATCACAGAAAGCTTTTATTGTTTCCACCACCACCACCACCACCACTCTGTAGAAGTGCCTGTCCTGAGAAATTTAATGACCCTCTACCCCCACCTGACTCCCCAGATGATTATTTGACCCAAAGTCCCACCAAAAACATCAAAATCTCCAAATACTTGATCATAAGTTTCTCCCTTGTAGCAACCGCTTTCATTGTCCTCAGCTTCTACGCCATCTACGCCAAATTTTTCTCTCCTCGGAACAGGTCAATACGAAGAACACTATCACGCCCAGAAACAGAACAAGATTTCTTGGACGAGGAAGAACAACAACAACATGGTCCTGTCGTTGACCACCCCATCTGGTACATCCGCACCACCGGTCTCCAACAAGCAGTCATTACCGCCATCACCGTCTGCAAATACAGAAAAGATGAAGGCTTGATTGAAGGCACCGATTGTTCCGTTTGCCTGAGCGAGTTTCAAGAAGACGAAAGTCTCAGGCTTTTGCCAAAGTGTAACCACGCTTTTCATTTACCTTGCATTGACACGTGGCTCAGATCACACACCAATTGCCCCATGTGCCGTGCTCCCATCGTCACTGACCCCACAAGGGTTCCTTCCATGGACCCTACTGCGTTTGAAGCAAGTTCTTTTGTGGAGGAGGTTTTGGAAAATAGTGTGGAAGATGCTCAAAGCAGTAGTGATGATTTGGTGAGGAATGAGGAAGAGGAAAGAGTGCAAGAAGGTGAAGTGTGTGAAAATGAGAACTTGGCTGTGACTGTGCAGCCGAGAAGATCGGTGTCTTTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCAACTGTTGTGTCAGGGGATTCTCATGGGAATCATTCAAAGAGGGTTGTTGGGAATGTGAATGGGAATTTGTCAACTAAAGGTGGTTCTTCTTCTTCTTCTTCGTCTAGTTCGGTGAAGAGGTCACGATCATTCAATGCCAAACACTTGCTATCATGGTATAGCCGTAGTCAGAGAAAGCCAAATGCTCCTTTGAGAAGCTTCTGA 1062 0.4595 MYAFSLNMVLHHRKLLLFPPPPPPPLCRSACPEKFNDPLPPPDSPDDYLTQSPTKNIKISKYLIISFSLVATAFIVLSFYAIYAKFFSPRNRSIRRTLSRPETEQDFLDEEEQQQHGPVVDHPIWYIRTTGLQQAVITAITVCKYRKDEGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPTAFEASSFVEEVLENSVEDAQSSSDDLVRNEEEERVQEGEVCENENLAVTVQPRRSVSLDSSSAAKISLALATVVSGDSHGNHSKRVVGNVNGNLSTKGGSSSSSSSSSVKRSRSFNAKHLLSWYSRSQRKPNAPLRSF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00283 353 MobiDBLite consensus disorder prediction 233 254 - -
Gma13g00283 353 PANTHER RING-H2 FINGER PROTEIN ATL54 27 341 - -
Gma13g00283 353 SMART ring_2 157 198 IPR001841 -
Gma13g00283 353 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 27 341 IPR044675 -
Gma13g00283 353 MobiDBLite consensus disorder prediction 31 50 - -
Gma13g00283 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 206 IPR013083 -
Gma13g00283 353 MobiDBLite consensus disorder prediction 291 326 - -
Gma13g00283 353 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Gma13g00283 353 CDD RING-H2_EL5_like 156 199 - -
Gma13g00283 353 MobiDBLite consensus disorder prediction 31 47 - -
Gma13g00283 353 Pfam Ring finger domain 156 199 IPR001841 -
Gma13g00283 353 SUPERFAMILY RING/U-box 147 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00283 Gma-Chr13 14247162 14248847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00283 64 203 C3H Transcription Factor Family AT1G72220 54.286 1.25e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00283 - - gmx:100801551 632.098