Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00264 ATGGAACCCCAGAAAAGTCTATTAATGGATGAAAGCTTATGTGATATTTTCAAAGACACAGAATTTGGGGGCACACACTTTGGTGGAGGGGATCTCTTTTCCATTTTGGAGAGCATAGATGACTTGAAAGATTTTCCTCCCACCAACAACAATGAAGCTGTTATTGGCCGAACTTCAAAAGAAAATGAGCAAAATTCAAGAATGGAGTCCCAAAAGGTTTTAATATCTTCAAGTGCCCCACAAGATTCTGAAACTGAGCATGAAATCTCACCCAAAAGCAAGAGACAAAAGCTTCGTTCCACATCGCCAGAGGAACTACAGAAGGTGTCTCACATAACCGTGGAGCGCAACCGAAGAAAGCAAATGAATGAAAACCTGTTGGTCTTGAGGTCTCTTATGCCTTCCTTTTATGTCAAACGGGGAGACCAAGCATCAATAATTGGAGGCGTGGTTGATTACATCAACGAAATGCAGCAGCTGCTGCAGTGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACATTGAAGTCCTAAGCCCTAGGCTAGTTTCAAGCCCAAGGCCCTCACCACTGAGCCCTAGAAAACCACCCTTGAGCCCTAGAATAAGCCTCCCCATTAGTCCAAGGACTCCACAACAACCTAGTAGCCCTTACAAGCCCAGGTTGCAGCCAGGATACCTTTCCCCAACCATAGCCAACTCTCCTACTTCTTCAGCTTCTTCTTCCATCAATGATAATATTAATGAGCTTGTTGCTAATTCAAAGTCCATTATAGCTGATGTTGAGGTCAAGTTTTCAGGTCCACATGTGCTTCTGAAGACTGTGTCACCACCAATTCCTGGCCAGGCCATGAGAATAATATCAGCTCTTGAAGACCTAGCACTAGAAATCCTCCATGTGAACATTAGCACTGCTGATGAAACCATGCTAAACTCATTCACTATTAAGGGGGGGTCTGTTTTTGAAGGGGACTCGCCAGTGGGGTTGGCGAGTTGGACACGTGGCGGCGCCTGGTGGACTCGCCAGTGGAGTTGGCGAGTTGCTGTCCACTACGAGTGGCGGGACCCGCCACGTGGACAGCAACTCGCCAACTCCACTGGCGAGTCCACCAGGCGCCGCCACGTGTCCAACTCGCCAACCCCACTGGCGAGTCCCCTTCAAAAACAGACCCCCCCTGGAAAAAGTTTCAAAACAGTCCCCTTTTGA 1203 0.4755 MEPQKSLLMDESLCDIFKDTEFGGTHFGGGDLFSILESIDDLKDFPPTNNNEAVIGRTSKENEQNSRMESQKVLISSSAPQDSETEHEISPKSKRQKLRSTSPEELQKVSHITVERNRRKQMNENLLVLRSLMPSFYVKRGDQASIIGGVVDYINEMQQLLQCLEAKKQRKVYIEVLSPRLVSSPRPSPLSPRKPPLSPRISLPISPRTPQQPSSPYKPRLQPGYLSPTIANSPTSSASSSINDNINELVANSKSIIADVEVKFSGPHVLLKTVSPPIPGQAMRIISALEDLALEILHVNISTADETMLNSFTIKGGSVFEGDSPVGLASWTRGGAWWTRQWSWRVAVHYEWRDPPRGQQLANSTGESTRRRHVSNSPTPLASPLQKQTPPGKSFKTVPF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00264 400 MobiDBLite consensus disorder prediction 68 84 - -
Gma13g00264 400 PANTHER TRANSCRIPTION FACTOR FAMA 9 317 IPR044283 GO:0003700|GO:0010052
Gma13g00264 400 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 9 317 - -
Gma13g00264 400 Gene3D - 92 171 IPR036638 GO:0046983
Gma13g00264 400 MobiDBLite consensus disorder prediction 356 400 - -
Gma13g00264 400 MobiDBLite consensus disorder prediction 185 203 - -
Gma13g00264 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
Gma13g00264 400 MobiDBLite consensus disorder prediction 85 107 - -
Gma13g00264 400 MobiDBLite consensus disorder prediction 358 393 - -
Gma13g00264 400 MobiDBLite consensus disorder prediction 182 239 - -
Gma13g00264 400 MobiDBLite consensus disorder prediction 46 107 - -
Gma13g00264 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 173 IPR036638 GO:0046983
Gma13g00264 400 Pfam Helix-loop-helix DNA-binding domain 107 158 IPR011598 GO:0046983
Gma13g00264 400 SMART finulus 112 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00264 Gma-Chr13 13233404 13237835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00264 9 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 49.584 1.24e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g00264 HLH 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00264 K20558 - gmx:100809717 532.332