Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00261 ATGGCCAAGATGCTAGGCCTCTTGTTCATGATTGGAGCAATGTTTTTTGGTGTTGTAGCTGAGCCAGTGGAAGATAAACAAGCATTGCTTGATTTCCTTCACAACATTAACCACTCTCATTATCTCAACTGGAACAAGAACACTTCTGTGTGCAAAAGGTGGATAGGAGTGACCTGCAACACTGATCAATCACAAGTTATAGCTCTTCATTTGACAAGAACAGGATTGAGTGGTCCAATTCCTTCCAACACTCTTAGCCGTCTCTCAAAACTCGAAACTGTGAGTCTTGCATCAAATAGCATATCTGGTTCTTTCCCTTCTGGCTTATCACAGCTAAAGAATTTGACATATCTCTATCTCCAATCCAATAATTTTTCTGGTTCATTGCCATCAGAATTTTCAGTTTGGAAGAATCTTAGGATTGTCAATTTGTCCAATAATTCTTTCAATGGGAGCATACCATTTTCACTTTCAAATTTGACTCATCTCACTTCTTTAGTCCTAGCCAACAACTCTCTTTCAGGTGAAATTCCCGATCTTTATATCCCTTCCCTGCAAGATCTGAATCTTGCCAACAATAACCTTAGTGGAGTTGTGCCTAAATTCCTTGAGAGATTTCCAAGTGGGGCATTTTCTGGTGGCGCAGATGAACAACAAGTGAAGTCTCAGAAAAGACAAGTATCTAGGAAAAAAGAAGGTTCCGAAAGCCGAGACAAGAACAAAATTGTATTCTTTGAGGGTTGCAATCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGCACGTTTGGGACAGTGTATAAGGCTGCTCTAGAAGATGCAACAACGGTGGTGGTGAAGAGGCTGAAGGATGTCACGGTCGGAAAACATGAGTTTGAACAGCAGATGGAGATGGTAGGGTGGATTAGGCACGACAATGTGGCTGCACTAAGGGCATATTACTATTCAAAGGAGGAGAAACTTATGGTATATGATTACTACGAACAGGGCAGTGTCTCTTCAATGTTGCATGGCAAAAGACGGGGAGGAAGAATTTCATTAGACTGGGACAGCCGATTGAAAATAGCAATTGGTGTAGCAAGAGGCATTGCTCACATCCATACTCAACATGGTGGGAAACTAGTCCATGGAAACATAAAGGCCTCAAACATCTTCCTCAACTCCAAAGGGTACGGTTGTCTATCCGACATCGGTCTTGCGGCATTGATGAATCCAGCATTGAGGGCAACAGGATACCGTGCACCGGAAGCAACCGACACTCGAAAAGCCATTCCGGCGTCCGATGTCTACAGCTTCGGGGTGCTGCTGCTCGAGCTTCTAACAGGGAGGTCTCCCTTACATGCCAAGGGAGGAGATGAAGTTGTCCACTTGGTTAGGTGGGTGAATTCTGTGGTCAGAGAGGAGTGGACTGCAGAGGTGTTTGATGTGGATTTACTAAGGTATCCAAATATAGAAGAGGAAATGGTTGAGATACTACAAATTGGGATGGCATGTGTTGTGAGAGTACCAGATCAGAGGCCACAAATTGGTGAGGTGGTGAGAATGGTTGAAGAAATTGGTAGAGTAATAAACACTGAAAATAGATCACCCACTGAGTCGAGATCAGAAGGTTCCACTCCAACCCCTCATGCAATTGAGACACCTTCTAGCTCTTTTGCACATTGA 1686 0.4371 MAKMLGLLFMIGAMFFGVVAEPVEDKQALLDFLHNINHSHYLNWNKNTSVCKRWIGVTCNTDQSQVIALHLTRTGLSGPIPSNTLSRLSKLETVSLASNSISGSFPSGLSQLKNLTYLYLQSNNFSGSLPSEFSVWKNLRIVNLSNNSFNGSIPFSLSNLTHLTSLVLANNSLSGEIPDLYIPSLQDLNLANNNLSGVVPKFLERFPSGAFSGGADEQQVKSQKRQVSRKKEGSESRDKNKIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAALEDATTVVVKRLKDVTVGKHEFEQQMEMVGWIRHDNVAALRAYYYSKEEKLMVYDYYEQGSVSSMLHGKRRGGRISLDWDSRLKIAIGVARGIAHIHTQHGGKLVHGNIKASNIFLNSKGYGCLSDIGLAALMNPALRATGYRAPEATDTRKAIPASDVYSFGVLLLELLTGRSPLHAKGGDEVVHLVRWVNSVVREEWTAEVFDVDLLRYPNIEEEMVEILQIGMACVVRVPDQRPQIGEVVRMVEEIGRVINTENRSPTESRSEGSTPTPHAIETPSSSFAH 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00261 561 Pfam Protein tyrosine and serine/threonine kinase 263 521 IPR001245 GO:0004672|GO:0006468
Gma13g00261 561 MobiDBLite consensus disorder prediction 210 234 - -
Gma13g00261 561 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Gma13g00261 561 ProSiteProfiles Protein kinase domain profile. 259 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00261 561 Pfam Leucine rich repeat 70 125 IPR001611 GO:0005515
Gma13g00261 561 Gene3D Transferase(Phosphotransferase) domain 1 334 543 - -
Gma13g00261 561 ProSitePatterns Protein kinases ATP-binding region signature. 265 296 IPR017441 GO:0005524
Gma13g00261 561 SUPERFAMILY Protein kinase-like (PK-like) 263 524 IPR011009 -
Gma13g00261 561 PANTHER LRR RECEPTOR-LIKE KINASE 6 213 - -
Gma13g00261 561 SUPERFAMILY L domain-like 35 204 - -
Gma13g00261 561 Gene3D Phosphorylase Kinase; domain 1 223 333 - -
Gma13g00261 561 MobiDBLite consensus disorder prediction 530 561 - -
Gma13g00261 561 PANTHER LRR RECEPTOR-LIKE KINASE 213 554 - -
Gma13g00261 561 PANTHER OS05G0588300 PROTEIN 213 554 - -
Gma13g00261 561 PANTHER OS05G0588300 PROTEIN 6 213 - -
Gma13g00261 561 Gene3D Ribonuclease Inhibitor 23 209 IPR032675 -
Gma13g00261 561 MobiDBLite consensus disorder prediction 531 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00261 Gma-Chr13 12999259 13001811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00261 7 526 Receptor kinase-like Gene Family AT5G53320 54.371 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gma13g00261 Pkinase 4.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00261 - - gmx:100810095 932.939