Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00243 ATGAAGAATATGAGTAGGCAAAAATATGTGGCCCACTTAAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCCTCAATGTACAGAGGAGTGGCAAGACACCACCAACATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGAGCTTTATCTTGGGACATTCAATAAGTCCTTCCAGAAAGTAGTTGCTGCATTTCCTCGTACTTCATTGCCAAATCATTCAGAACAATAG 240 0.4333 MKNMSRQKYVAHLRRKSSGFSRGASMYRGVARHHQHGRWQARIGRVAGNKELYLGTFNKSFQKVVAAFPRTSLPNHSEQ 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00243 79 SMART rav1_2 26 75 IPR001471 GO:0003700|GO:0006355
Gma13g00243 79 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 1 58 - -
Gma13g00243 79 Gene3D AP2/ERF domain 26 67 IPR036955 GO:0003700|GO:0006355
Gma13g00243 79 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 58 - -
Gma13g00243 79 SUPERFAMILY DNA-binding domain 25 59 IPR016177 GO:0003677
Gma13g00243 79 ProSiteProfiles AP2/ERF domain profile. 26 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00243 Gma-Chr13 12421686 12422109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00243 1 57 AP2-EREBP Transcription Factor Family AT4G37750 91.228 1.15e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00243 K09285 - csin:114278022 118.242