Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00219 ATGTTGAATATGTTGGCATTAGCCCTCGTAGTAGTAATAATAACCGTAGCTGTTGTACCTCATCAAACCCTTTCCGCCACAACACCAAAACAAGCCCTCCCTGGCTGCAAATCCACCTGTGGAAATGTCCAAATTCCTTATCCATTCGGCATAGGTAACTCTTCAACACCCGGTCACCGACCCTGTTTCTTGGATCGCAAATTCAAGCTTACTTGTGATGGCTCCATATTATATTATGGTAATGTAAGAGTTTCAAACATCAGCTTCCTAAGTCATCAAATAGACCTATTGGCCTCTTTCGCATCGCTTTGCCACCAGCAAAACGGAAGCGAACTCCCCAAGTCCTACCATCTTCGCACTGGCAGTTTCAGCATTTCAAGCAACGAAAACAAGTTACTAACCGTTGGCAGCGATAGCTATGGCTACGTAAATAGTTATTTCAACGGGGAGTCATATTCAACTGGGTGCTTAACGAGCTCTCATGGCAACACAAAGAGGATCAAAAACGGAACGTGCTCGGGCATAGGGTGTTGCCAGGTGGATATTCCTCCTGGAATGAGGAACATCACTCTGCGGGCAAGAGTTTTCCACAATTCAACGCTAGATTGGGGAAACTGCAGCTATTCATTTGTAGTCAAAAATGGCTTTTATAATTTTTCTACTACTGACATACAAAGCTTCCCACACAAGAAGATCCCATTGGTTCTGGATTGGACCGTGGGAAACAAAAGCTGTGATGATTCCAATAGTAAAGGCAATGAGGCCTGCAAGTGGAATAGCTATTGCGACGACAAGGACACTGATTTTGGTTATCGATGCAGATGTAAAGATGGCTATGAAGGAAACCCATATCTTGGCTGTACAGACATTGACGAATGTAAGACAGACAATCATACATGCATAAGTGAACAAAATTGTGTCAACACCATTGGATCCCATACATGTTTCTGTCCAAAGGGGCTTTCCGGAAATGGAACAAAGGAAGAAGGGTGCCACAAACGAGATGTAGTTCCGAAGGTTGTCATAGGAGTAGGAGCAGCAATTGTTATTCTGTTTGTGGGCACTACCTCATTGTACTTGATATACCAGAAAAGGAAACTCGTCAAACTTAGAGAGAAATACTTTCAGCAGAATGGTGGTTCCATTTTGCTACAGCAACTCTCTACAAGTGAAAACTCCTCCCGAATTACTCAAATTTTCACAGAAGAAGAACTAAAGAAAGCAACCAACAACTTCGACGAGAGCTTAATCATTGGTAGTGGAGGTTTTGGAACTGTTTTCAAAGGATATCTTGCAGATAACAGAGTTGTTGCTGTCAAAAAGTCCAAAATAGTTGATGAAAGCCAAAAGGAACAATTCATTAACGAGGTGATTGTTCTATCCCAAATCAATCATAGGAATGTGGTCAAACTCTTGGGATGCTGTTTAGAGAGAGAAGTTCCTTTACTGGTTTATGAATTTGTTAATAATGGTACCCTTTATGATTTTATACACACTGAAAGAAAGGTAAATAATGAAACTTGGAAAACCCATCTGAGGATAGCAGCAGAGTCAGCTGGAGCACTATCATATCTTCACTCAGCAGCCTCAATACCAATTATCCACAGAGATGTCAAGACTGCTAACATACTCTTGGATAACACTTATACTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTACCAATTGATCAAACAGAAATAGCCACAATGGTGCAAGGAACTTTTGGTTACCTGGATCCAGAGTACATGCGTACAAGCCAACTAACTGAGAAAAGTGATGTCTATAGCTTTGGGGTAGTGCTTGTAGAGTTGCTAACGGGGGAGAAACCTTATTCTTTTGGCAAACCAGAGGAGAAAAGAAGTCTTACTAACCACTTTTTGTCTTGCTTGAAAGAGGATCGCCTGTTTGATATTGTTCAAATTGGCATTGTGAATGAAGAAAATAAAAAGGAGATCATGGAGGTTGCTATTCTTGCTGCAAAGTGCTTGAGACTCAACGGGGAGGAAAGGCCTAGCATGAAGGAAGTGGCAATGGAGTTGGAGGGAATAAGGATAATGGAGAAGCATCCCTGGATTAATACAGACCAAAATGTTGAGGAGACTCAACACCTTCTTCACGAGGCATCATCTAGCATTTATGAGCTTGGTGATAGCAGCAGCCATCAATATGCTGGGTATGATAGCATTAGGGATCATGTACTGATTGCTTTGGATGATGGAAGATGA 2232 0.4171 MLNMLALALVVVIITVAVVPHQTLSATTPKQALPGCKSTCGNVQIPYPFGIGNSSTPGHRPCFLDRKFKLTCDGSILYYGNVRVSNISFLSHQIDLLASFASLCHQQNGSELPKSYHLRTGSFSISSNENKLLTVGSDSYGYVNSYFNGESYSTGCLTSSHGNTKRIKNGTCSGIGCCQVDIPPGMRNITLRARVFHNSTLDWGNCSYSFVVKNGFYNFSTTDIQSFPHKKIPLVLDWTVGNKSCDDSNSKGNEACKWNSYCDDKDTDFGYRCRCKDGYEGNPYLGCTDIDECKTDNHTCISEQNCVNTIGSHTCFCPKGLSGNGTKEEGCHKRDVVPKVVIGVGAAIVILFVGTTSLYLIYQKRKLVKLREKYFQQNGGSILLQQLSTSENSSRITQIFTEEELKKATNNFDESLIIGSGGFGTVFKGYLADNRVVAVKKSKIVDESQKEQFINEVIVLSQINHRNVVKLLGCCLEREVPLLVYEFVNNGTLYDFIHTERKVNNETWKTHLRIAAESAGALSYLHSAASIPIIHRDVKTANILLDNTYTAKVSDFGASRLVPIDQTEIATMVQGTFGYLDPEYMRTSQLTEKSDVYSFGVVLVELLTGEKPYSFGKPEEKRSLTNHFLSCLKEDRLFDIVQIGIVNEENKKEIMEVAILAAKCLRLNGEERPSMKEVAMELEGIRIMEKHPWINTDQNVEETQHLLHEASSSIYELGDSSSHQYAGYDSIRDHVLIALDDGR 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00219 743 CDD STKc_IRAK 418 685 - -
Gma13g00219 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Gma13g00219 743 CDD EGF_CA 289 323 - -
Gma13g00219 743 ProSiteProfiles Protein kinase domain profile. 412 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00219 743 SUPERFAMILY EGF/Laminin 287 324 - -
Gma13g00219 743 Gene3D Phosphorylase Kinase; domain 1 377 487 - -
Gma13g00219 743 Gene3D Transferase(Phosphotransferase) domain 1 488 709 - -
Gma13g00219 743 SMART serkin_6 412 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00219 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 712 IPR045274 GO:0007166
Gma13g00219 743 SMART egfca_6 289 332 IPR001881 GO:0005509
Gma13g00219 743 Pfam Wall-associated receptor kinase galacturonan-binding 36 95 IPR025287 GO:0030247
Gma13g00219 743 Gene3D Laminin 243 331 - -
Gma13g00219 743 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Gma13g00219 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 25 712 - -
Gma13g00219 743 SUPERFAMILY Protein kinase-like (PK-like) 390 683 IPR011009 -
Gma13g00219 743 Pfam Protein kinase domain 416 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00219 743 Pfam Calcium-binding EGF domain 289 331 IPR001881 GO:0005509
Gma13g00219 743 SMART egf_5 244 288 IPR000742 -
Gma13g00219 743 SMART egf_5 292 332 IPR000742 -
Gma13g00219 743 ProSitePatterns EGF-like domain signature 2. 273 287 IPR000742 -
Gma13g00219 743 ProSiteProfiles EGF-like domain profile. 289 332 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00219 Gma-Chr13 11766720 11769775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00219 13 743 Receptor kinase-like Gene Family AT1G21230 44.593 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gma13g00219 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00219 - - gsj:114381577 1483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00219 13 11766720 11769775 Gma13g00219 13 11766720 11769775 ECH