Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00199 ATGCACTTGGTGAGCGAGAAACAGTTTGAGCGTCATGCGGAGACAGAGAGCTTTATTGTCCACCAAATTTGTGCTACCAGTGAGCAAGAGCATGCTTGCCCCCCTTCTTCCTGTGGCAAAATCACCCACATAACTTATCCATTTCGATTAAAAAGCTACCCAAAAGGTTGCGGTGACAACAGGTATGAGCTAGCTTGTGAAAACAATGTTACGGTGTTATATTTGTACTCTGGAAAATATCATGTGCAAGCTATCAACTACAACAATTTCACAATCCGAGTGGTGGATCCGGGTGTTCAACAGCCAAATTGCTCCTCCCTTCCTCGCTACTTCTTGTCTCCAACCAATTTCAGTGTTGTTTATAGTTTCTTCGATAATGAGGTGGATCCATACCTAGCCTTTCAAAATCGAGATTATTCTTGGGAGCACGTTTTCCAGCATATAGTTTTCTTAAATTGTAGGCATGCAGTGATTGACAATGAGAAGTATGTGGAAACTGATCCTTGCATCAAGTGGCACTCCAAAGGGTACATATACGCTATTGCTGGTGACTTAATAGCAAAGGACTTTGAAGTTGGTTGTGAGGTAAAGCTGGTTGCTCCCACATCATGGTGGGGTTTGGATACAAATAATTCTTCATACACTCAGATGCACAGAGCGCTTCTCTATGGATTTGAGCTTTCATGGATGAATCTCGCCTGTGACCATCATTGTGGATATTCCACCTGCGCACTTGACACTTCCAGTCAGATGCTTCAATGCTCCCGTGGCTATTTCCTGGGAAGGgagtaccctcctaagtaccctcctgagtacccCACTGAACGAGGCAAGTTTTTGTTTGGGATGACATTGTTTATTGTGCTTTTGATATACAAATGGAGAAAAAGGCATTTGTCAATATATGAAAATATTGAAAATTATCTGGAACAAAATAAGTTGATGCCTATTGGATACTCATACAAAGAAATTAAGAAGATGACTAGAGGTTTCAAAGAGAAATTGGGTGAAGGAGGCTATGGCTTTTTATTCAAGGGAAAGTTGCGTAGTGGGCCTTCTATGGCAATTAAAATGCTACATAAAGCAAAAGGTAACGGCCAAGACTTTATTAGTGAAATTGCAACAATTGGAAGAATACATCATCAAAATGTAGTACAATTAATTGGATATTGTGTTGAAGGCTCAAAACGTGCCCTTGTTTATGAATTCATGCCCAATGGATCCCTTGACAAATTTATTTTTACCAAAGATGGAAATATACATTTAACATATGACAAAATATATAATATAGCAATTGGAGTAGCTCGTGGGATTGCTTATCTCCATCATGGGTGCGAGATGCAAATTTTGCATTTTGATATCAAGCCCCATAACATTCTTCTTGATGAAACATTCACCCCAAAGGTCTCTGACTTTGGATTGGCAAAACTATATCCAATAGATAATAGCATTGTGACTATGACAGCGGCAAGAGGGACAATTGGGTATATGGCTCTAGAATTATTTTATAAAAATATTGGAGGACTATCCCACAAGGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAGATGGCAAGTAAGAGGAAGAACCTAAATCCCCATGCGGATCATTCAAGTCAACTTTACTTTCCCTTTTGGATTTATAATCAACTTGGAAACGAGACAAATATAGAAATGGAAGGTGTCATAGAGGAGGAAAATAAAATAGCAAAAAAGATGATAATTGTTTCACTTTGGTGTATACAGTTGAAACCAACCGATCGCCCCTCAATGAACAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAAGCCAGGAAATACCTCCAAAGCCTTCTTTGTATCCACATGAGACAATGGAAAATGATCAAAGCATCTACTCTAGTCAAACAATGTCAACGGACTTCATTAGTTCTTCTAATTATTCCAAGGAAATTGTGACTAATCCTTTGGTAGAGGATGCTATTTGA 1971 0.382 MHLVSEKQFERHAETESFIVHQICATSEQEHACPPSSCGKITHITYPFRLKSYPKGCGDNRYELACENNVTVLYLYSGKYHVQAINYNNFTIRVVDPGVQQPNCSSLPRYFLSPTNFSVVYSFFDNEVDPYLAFQNRDYSWEHVFQHIVFLNCRHAVIDNEKYVETDPCIKWHSKGYIYAIAGDLIAKDFEVGCEVKLVAPTSWWGLDTNNSSYTQMHRALLYGFELSWMNLACDHHCGYSTCALDTSSQMLQCSRGYFLGREYPPKYPPEYPTERGKFLFGMTLFIVLLIYKWRKRHLSIYENIENYLEQNKLMPIGYSYKEIKKMTRGFKEKLGEGGYGFLFKGKLRSGPSMAIKMLHKAKGNGQDFISEIATIGRIHHQNVVQLIGYCVEGSKRALVYEFMPNGSLDKFIFTKDGNIHLTYDKIYNIAIGVARGIAYLHHGCEMQILHFDIKPHNILLDETFTPKVSDFGLAKLYPIDNSIVTMTAARGTIGYMALELFYKNIGGLSHKADVYSFGMLLMEMASKRKNLNPHADHSSQLYFPFWIYNQLGNETNIEMEGVIEEENKIAKKMIIVSLWCIQLKPTDRPSMNKVVEMLEGDIESQEIPPKPSLYPHETMENDQSIYSSQTMSTDFISSSNYSKEIVTNPLVEDAI 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00199 656 SMART serkin_6 329 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00199 656 ProSiteProfiles Protein kinase domain profile. 329 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00199 656 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Gma13g00199 656 Gene3D Transferase(Phosphotransferase) domain 1 404 615 - -
Gma13g00199 656 Gene3D Phosphorylase Kinase; domain 1 303 403 - -
Gma13g00199 656 Pfam Protein tyrosine and serine/threonine kinase 331 599 IPR001245 GO:0004672|GO:0006468
Gma13g00199 656 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 18 254 - -
Gma13g00199 656 PANTHER RUST RESISTANCE KINASE LR10-RELATED 278 630 IPR045874 GO:0004672
Gma13g00199 656 PANTHER RUST RESISTANCE KINASE LR10-RELATED 18 254 IPR045874 GO:0004672
Gma13g00199 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Gma13g00199 656 SUPERFAMILY Protein kinase-like (PK-like) 315 600 IPR011009 -
Gma13g00199 656 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Gma13g00199 656 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 278 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00199 Gma-Chr13 11120340 11124576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00199 28 641 Receptor kinase-like Gene Family AT5G38260 36.449 4.21e-114 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gma13g00199 PK_Tyr_Ser-Thr 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00199 - - gmx:106794110 1217.22