Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00198 ATGGGGAGACAGAGTGCTTTATTGGTGTTCGTGTTATTACTAGTCCAGCAAATTTGTGCTACCAATGAGCAAGAGCATGCTTGCCCCCCTTCTTCCTGTGGCAAAATCACCAACATAACTTATCCATTTCGATTAAAAGGCGACCCAAAAGGTTGCGGTGACAACAGGTATGAGCTAGCTTGTGAAAATAATGTTACGGTGTTATATTTGTACTCTGGAAAATATCATGTGCAGGCTATCAACTACAACAATTTCACAATCCGTGTGGTGGATCCGGGTGTTCAACAGCCAAATTGCTCCTCCCTTCCTCGCTACTTTTTGTCTCCATCAAATTTCAGTGATAGTGATAATTTTTACTTGGATCGATACCTAGCCTTTCAAAATCGAGATTATTCTTGGGAGCACGTTTTCCAGCATATAGTTTTCTTAAATTGTAGGCACGCAGTGATTGACAATGAGAAGTATGTGAAAACTGATCCTTGCATCAAGTGGCACTCCAAAGGGTACATATACGCTATTGCTGGTGACTTAATAGCAAAGGACTTTGAAGTTGGTTGTGAGGTAAAGCTGGTTGCTCCCACATCATGGTGGGGTTTGGATACAAATAATTCTTCATACACTCAGATGCACAGAGCGCTTCTCTATGGATTTGAGCTTTCATGGATCAATCTCGCCTGTGTCCATCAGTGTGGATATTATTTCGACTGCGCATTTGACGCTTACAGTCAGAAGCTTCAATGCCCCTGCCGCAAAATGTTCCCGTTCCAGTTCCAGTTTACTGAATGTGCTAAAGGATACTCATACAAAGAAATTAAGAAGATGGCTAGAGGTTTCAAAGACAAATTGGGTGAAGGAGGCTATGGCTTTGTATTCAAGGGAAAGTTGCGTAGTGGGCCTTGTGTGGCAATTAAAATGCTACATAAAGCAAAAGGTAGCGGCCAAGACTTTATTAGTGAAATTGCAACAATTGGAAGAATACATCATCAAAATGTAGTACAACTAATTGGATATTGTGCTGAAGGCTCAAAACGTGCCCTTGTTTATGAATTCATGCCCAATGGATCTCTTGAAAAATTTATTTTTACCAAAGATGGAAGTATACATTTAACATATGACGAAATATTTAATATAGCAATTGGAGTAGCTCGTGGGATTGCTTATCTCCATCATGGGTGCGAGATGCAAATTTTGCATTTTGATATCAAACCCCATAACATCCTTCTTGATGAAACATTCACCCCAAAGGTCTCTGACTTTGGATTGGCAAAACTATATCCAATAGATAATAGCATTGTGACTATGACAGCGGCAAGAGGGACAATTGGGTATATGGCTCCAGAATTATTTTATAAAAATATTGGAGGAATATCCCACAAGGCTGATGTTTATAGCTTTGGGATGCTTTTGATGGAGATGGCAAGTAAGAGGAAGAACCTAAATCCCCATGCAGATCATTCAAGTCAACTTTACTTTCCCTTTTGGATTTATAATCAACTTGGAAAAGAGATAGATATAGAAATGGAAGGTGTCACAGAGGAGGAAAATAAAATAGCAAAAAAGATGATCATTGTTTCACTTTGGTGTATACAGTTGAAACCAAGCGATCGCCCCTCAATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAAGCCTGGAAATACCTCCAAAGCCTTCTCTATATCCACATGAGACAATGGAAAATGATCAAAGCATCTACTCTAGTCAAACAATGTCAACGGACTTCATTAGTTCTTCTAGTTATTCCAAGGAAATTGTGACTAATCCTTTTGTAGAGAATGCTATTTGA 1812 0.3918 MGRQSALLVFVLLLVQQICATNEQEHACPPSSCGKITNITYPFRLKGDPKGCGDNRYELACENNVTVLYLYSGKYHVQAINYNNFTIRVVDPGVQQPNCSSLPRYFLSPSNFSDSDNFYLDRYLAFQNRDYSWEHVFQHIVFLNCRHAVIDNEKYVKTDPCIKWHSKGYIYAIAGDLIAKDFEVGCEVKLVAPTSWWGLDTNNSSYTQMHRALLYGFELSWINLACVHQCGYYFDCAFDAYSQKLQCPCRKMFPFQFQFTECAKGYSYKEIKKMARGFKDKLGEGGYGFVFKGKLRSGPCVAIKMLHKAKGSGQDFISEIATIGRIHHQNVVQLIGYCAEGSKRALVYEFMPNGSLEKFIFTKDGSIHLTYDEIFNIAIGVARGIAYLHHGCEMQILHFDIKPHNILLDETFTPKVSDFGLAKLYPIDNSIVTMTAARGTIGYMAPELFYKNIGGISHKADVYSFGMLLMEMASKRKNLNPHADHSSQLYFPFWIYNQLGKEIDIEMEGVTEEENKIAKKMIIVSLWCIQLKPSDRPSMNKVVEMLEGDIESLEIPPKPSLYPHETMENDQSIYSSQTMSTDFISSSSYSKEIVTNPFVENAI 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00198 603 Pfam Protein kinase domain 279 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00198 603 SMART serkin_6 276 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00198 603 ProSiteProfiles Protein kinase domain profile. 276 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00198 603 Gene3D Transferase(Phosphotransferase) domain 1 351 555 - -
Gma13g00198 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Gma13g00198 603 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 252 IPR045874 GO:0004672
Gma13g00198 603 ProSitePatterns Protein kinases ATP-binding region signature. 282 304 IPR017441 GO:0005524
Gma13g00198 603 CDD STKc_IRAK 282 548 - -
Gma13g00198 603 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Gma13g00198 603 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 6 252 - -
Gma13g00198 603 Gene3D Phosphorylase Kinase; domain 1 255 350 - -
Gma13g00198 603 PANTHER RUST RESISTANCE KINASE LR10-RELATED 259 577 IPR045874 GO:0004672
Gma13g00198 603 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 259 577 - -
Gma13g00198 603 SUPERFAMILY Protein kinase-like (PK-like) 261 547 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00198 Gma-Chr13 11112091 11115611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00198 5 588 Receptor kinase-like Gene Family AT5G38260 34.776 4.54e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gma13g00198 Pkinase 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00198 - - gmx:100782716 840.491