Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00187 ATGGAAAACAACGTCACAATATTACTCTTTCTTCCCCTCTTCACCATTCTCACAACCGTTGCAGCTTCTAATTCCTCCTCCTCATCATGCCCCATCAACTTCACCTACGTTGAAACCTTCCCATGGAACACTTCATCTTGCACAAACCCAATCAACAAACAACCTTGTTGCATAGCATTAAACACCATCTTCCACATAGGCCTCACCCAACACCTCAAAGAAACCTCATTGTTTCAACTTCCCAATGAAAACACTTCCTCAACTTGCTTATCAGATTTCCAAACCAAGCTAAAAGCCTTGTCAATAGACCCTTCTTTGGTCCCTTTTTGCTTCCCTAACCCATCACGATTTGTTACCAACTCTTCCACATGTGCAGGTATTATAACCACACAAGATTGGGAACAAAAAGTGGACTCGGTTAGGCTTGGTCCATTATACTCTTACTGCAAAGAAAGCCTTGATGACGAAACTCGGTGTCAAAATTGCATTGCATCAAGTTTTAAAGTGGCTTTTCAGCTTACTAGTACTAACCAAAATGCTAGTGTCAAAGAATGTTTTTCCTTTGCATCACTATATGCTGCAGCAGTTGTTAATCCACAAGGTGCAAGTGATGCAACCACGATTGGTTGCATATTGAGGGTGCCACTGAATGGTGAAGTAACAACAAAAGGGTCATCAAAGAAGAGAAGAAAAGTTGTGAAGCTGGTTTTTGCGGTATTGGGTGGCATGGTTGGTGTTGTTGTCATTGCTTTTGTGGTGATGGTTGTGTGCAGGAAGTGGGATAGGAGAAGGAAGGAAAGGGTTTATTATCATAGGGAAATTGAAAACGGTGTGAGGAACAGTGTTTTGCCTAACACTGGTGCAAAATGGTTTCACATATCGGAGCTTGAACGTGCCACTGATAGATTTTCAAGGAGGAACATGCTTGGCCAAGGTGGTGATGGGGTTGTGTACAAAGGGAAGCTTTCAGATGGCACTTTGGTTGCAATTAAGGAGAATTTTAATTTGGAGAGTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATCATAAGCAAGATAAAGCATAGGAACCTTCTTGCTCTCAAGGGTTGTTGCATTGCAAGTGATGATTTGAAAGGTAAGAGGAGGTTTTTGGTTTATGATTTCATGCCTAATGGAAGCTTATGTTACCAATTATCTCTTAATGTGGCCAATAGGTTAACATGGCCACAAAGAAAGAACATAATCATTGATGTGGCAAAAGGGCTTGCTTATTTGCACTATGAAATCAAGCCTCCTATTTATCATCGTGACATTAAGGCTACCAACATTCTTTTGGACTCCAAAATGAGTGCTAAATTATCAGATTTTGGGTTGGCAAAAGAAGGTAGTGAGGAGGAACAATCTCATGTAACTACAAAAGTTGCTGGCACATATGGTTATGTGGCACCAGAATATGCTCTATATGGACAACTAACTGAGAAAAGTGATGTGTATAGTTTTGGTATTGTGATTCTTGAAATCATGAGTGGTAGAAAAGTGCTTGATAATTTGAATTCATCAGCGGATGCCATCACTGATTGGGTGTGGACACTTGTGGAATCAGGAAAGATGGTGGAAGTTTTTGATGAGTCAATAAGAGAAGGGCCAGAAAAAGTTATGGAAAGGTTTGTTCATGTTGGAATGCTGTGTGCTCATGCTGTGGTGGCTTTAAGGCCTACTATTGCTGAGGCTCTTAAGATGTTAGAGGGTGACACTGATGTTCCCAAATTACCAGATAGGCCGGTGCCTTTGGGTCATGCTTCTTTTCAATCTTCTCTGTTGCATGGTTTGCAAGGAAGTGGAAGATCTAAGGCACATGTTTCATCTTAA 1854 0.4105 MENNVTILLFLPLFTILTTVAASNSSSSSCPINFTYVETFPWNTSSCTNPINKQPCCIALNTIFHIGLTQHLKETSLFQLPNENTSSTCLSDFQTKLKALSIDPSLVPFCFPNPSRFVTNSSTCAGIITTQDWEQKVDSVRLGPLYSYCKESLDDETRCQNCIASSFKVAFQLTSTNQNASVKECFSFASLYAAAVVNPQGASDATTIGCILRVPLNGEVTTKGSSKKRRKVVKLVFAVLGGMVGVVVIAFVVMVVCRKWDRRRKERVYYHREIENGVRNSVLPNTGAKWFHISELERATDRFSRRNMLGQGGDGVVYKGKLSDGTLVAIKENFNLESKGDEEFCYEVEIISKIKHRNLLALKGCCIASDDLKGKRRFLVYDFMPNGSLCYQLSLNVANRLTWPQRKNIIIDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMSAKLSDFGLAKEGSEEEQSHVTTKVAGTYGYVAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDNLNSSADAITDWVWTLVESGKMVEVFDESIREGPEKVMERFVHVGMLCAHAVVALRPTIAEALKMLEGDTDVPKLPDRPVPLGHASFQSSLLHGLQGSGRSKAHVSS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00187 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Gma13g00187 617 Pfam Protein kinase domain 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00187 617 SUPERFAMILY Protein kinase-like (PK-like) 282 577 IPR011009 -
Gma13g00187 617 Gene3D Phosphorylase Kinase; domain 1 265 383 - -
Gma13g00187 617 SMART serkin_6 303 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00187 617 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 14 603 - -
Gma13g00187 617 Pfam SPARK 25 185 IPR043891 -
Gma13g00187 617 PANTHER OS01G0253100 PROTEIN 14 603 IPR045271 GO:0004714|GO:0006468
Gma13g00187 617 CDD STKc_IRAK 309 578 - -
Gma13g00187 617 Gene3D Transferase(Phosphotransferase) domain 1 384 584 - -
Gma13g00187 617 ProSiteProfiles Protein kinase domain profile. 303 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00187 Gma-Chr13 10760795 10762841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00187 19 606 Receptor kinase-like Gene Family AT1G11050 48.875 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gma13g00187 Pkinase 3.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00187 - - gmx:100798901 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00187 13 10760795 10762841 Gma13g00187 13 10760795 10762841 ECH