Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00177 ATGGAACGTGAAGAAGGGAAACAACCTCCCCAAAAGACCCCATCACACAATCAACACGAGCAAGCTAATTCCAACAATTTTGTTCTAGAACATAACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGAGGGCGAGTCTTCCTTTGATGACAATGATTATGATGGGGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCGGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATTACAACAACGATGATGACAATGATGAAGATATGGAAGAAGATGACATCGATGTAGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGGGATTTTATAGGACAAGAGAAGAGAGGGTTGTCAGCACATGAAATTTGTTCATGCTTGCATATTCACATTTTCCATTCTGCTGAAAACAAAAGTGGAATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAACCTTTGGTGGCAATTCAGTGCGAGCACCCTTATCACACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCAATATGTAACACTGAAATTTCAGCTCCCAAGATGGTTAGTTAA 612 0.3938 MEREEGKQPPQKTPSHNQHEQANSNNFVLEHNLQEQSGTFTTFASFESETEGESSFDDNDYDGDADFFLSQEFESELQFLESEGSNYNNDDDNDEDMEEDDIDVDELTYEELIELGDFIGQEKRGLSAHEICSCLHIHIFHSAENKSGIDRCVICQVEYEEGEPLVAIQCEHPYHTDCISKWLQIKKVCPICNTEISAPKMVS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00177 203 MobiDBLite consensus disorder prediction 11 50 - -
Gma13g00177 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 200 IPR045191 GO:0061630
Gma13g00177 203 SMART ring_2 152 192 IPR001841 -
Gma13g00177 203 SUPERFAMILY RING/U-box 151 199 - -
Gma13g00177 203 MobiDBLite consensus disorder prediction 1 63 - -
Gma13g00177 203 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 200 - -
Gma13g00177 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 199 IPR013083 -
Gma13g00177 203 Coils Coil 70 90 - -
Gma13g00177 203 Pfam RING-H2 zinc finger domain 150 193 IPR024766 GO:0008270
Gma13g00177 203 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00177 Gma-Chr13 10627205 10628102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00177 90 196 C3H Transcription Factor Family AT3G63530 46.364 1.03e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00177 K19045 - gmx:100777284 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00177 13 10627205 10628102 Gma13g00177 13 10627205 10628102 ECH