Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00175 ATGTCAAAGTCTCCCTCTCATGAACAGAGGCAGTCCATTTATTCTGCCTCTCAGCCTGGGTCATTTAATGAGGCAACAGGAATGGATGATCCAGAATCTACAATGGCAAAAGTTGCTAATTTTGTGGAGCAACTGCATGCCAACTTGTCATCACCAGTTGAGAAAGAAACTATTACAGCACGCTTGCTAGGTATTGCCAGGAGAAGAAAGGATGCTAGAGCAATCATCGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAGCATTCTCAGAAATGGAACCCCTCTTGCAAAAGTTAATGTTGCTTCCACTCTCAGTGTCCTGTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGCTGTATCCCACCATTATTGTCTCTTTTAAATTATGAATCCACCGATGCCAGGAAGGCAGCAGCTGAAGCGATATATGAAGTTTCCTCAGGTGGTCTTTCTGATGATCATGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACCTTATGGAATCAACTAAATCCAAAAAACAAGGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGCGACAAAGACGGCTACTGGAAAGCTACATTAGAAGCTGGAGGCGTGGATATCATAGTAGGGCTCTTGTCTTCAGATAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCATTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCAGCTTGTTGGTCAGGAAAATGACATTTCTGTAAGAGCTAGTGCTGCTGATGCCCTAGAGGTCCTCTCTTCAAAGTCTACCAAGGCTAAAAAGGTCATTGTTAATGCAGATGGTATTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCTAATGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTGCAGGAGCATGCAACTCGAGCTTTAGCCAATATCTGTGGTGGCATGTCTGCTTTAATACTATATCTTGGAGAACTTTCACGTTCTCCTCGCCCTGATGCACCAGTTGGTGATATAATTGGCGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAAAGTTGATGTTGATGAGAAACATTTTGATGCAACTCAGATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCAGGACAACAAACTAATTCAAGAGCGTGTCCTTGAGGCTATGGCTAGTCTATATGGAAATGTCTGTCTCTCAAAGTGTCTCATTCAGGCAGATTCAAAGAAGGTTCTGATTGGACTTATAACCATGGCTGCCACTGATGTGCAAGAGTATCTGATACTTTCATTGACAAGCTTGTGTTGTGATAAGATTGGAGTATGGGAGGCCATTAAAAAAAGAGAAGGTATCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGTTGCTAGCAATCTTAACTGACCAGGTCGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCACCATTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGAAGCAGCAAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGAGCCATCCCAGCATTCTTGTGGCTTCTTAAGAGTGGTGGACCAAAAGGACAGCAAGCTTCTGCCATGGCACTCACAAAGCTTGTCCGAGTAGCTGATTCTGCCGCAATTAATCAGCTATTGGCATTACTCTTAGGAGATTCTCCAAGCTCAAAAGCCCACATAATCCGAGTTTTAGGTCATGTTCTTACTATGGCTTCGCAGAATGATCTCCTTGAAAAGGGTTCTGCAGCTAATAAAGGCTTGAGATCTCTAGTTCAGGTCCTCAATTCATCAAATGAGGAAACCCAAGAATATGCAGCTTCAGTTCTAGCTGATTTATTTATTGCAAGACAAGACATCTGTGATAGTCTTGCGACTGATGAGATTGTACTTCCTTGCATGAAACTTTTGACTAGCAAAACTCAAGTTGTTGCCACTCAATCAGCTCGAGTGTTAAGTGCTCTGTCTCGTCCAACAAAGAACAAGGCTGCAAATAAAATGTCTTATATTGTAGAGGGTGATGTCAAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTAGCAGAAGATGTTGTTTCAGCTTTAGCAAGAGTTCTGGCAGAAGGGACCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCAGTAGGTGATGTTCTCAAGGGTAACACTCAATGTCGTTTCACTGTGCTTGCACTTGTTGATTCCTTAAGAGCTATGGATATGGACGGCACTGATGCTGCAGATGCTTTAGAAGTAATTGCACTGCTAGCCAGAACTAAACAGGGGGTCAACTACACTTACCCTCCATGGTCAGCTCTGGCTGAAATGCCATCAAGTTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCATTCCCTTGTGCAAGAGAAAGCAATTAAAATTCTATCAAGACTTTGTGGGGATCAGCCAGTTGTTCTTGGTGATATGTTATCTGCTAGTTCCAAATCCATTGGTTCATTGGCTAATAGAATAATGAACTCCTCCAGTCTAGAAGTAAAAATTGGAGGTTCTGCCTTACTAATTTGTGCTGCAAAGGAGAAGAAAAAGCTTTCAATGGATTCACTTGATGCTTCTGGGTTTCTAAAACCATTAATATATTCTTTAGTTGAAATGATAAAGCAGAGTTGTAGCTATTCTTTGTTAGAAATTGAAGTTGTTGCTTCTAAAGGTTTTATGGAGAGAAGTTCTTTTCAAGAAGTCGATGAGTTTGATATTCCTGATCCAGCCACTGCCTTGGGAAGCACTATTGCCATGTGGTTGCTTTCAGTTATTGCTTCTTTCCATATAAAGAGCAAGCTCACAATTATGGAAGCCGGTGGACTTGAAGCTCTCTCTGACAAACTTTCAAGACATACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAACATGGATTAATGCCTTGCTCTTGGCCATTTTATTTCAAGATGCAAATGTCATTCTATCTCCTGTCACAATGCGCATTATACCTTCTATCGCTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGTCTATGGCTAGTCTTGTTTGTAATGGTAATAAGGGAATAGATCTTGCCATTGCGAATTCTGGTGCTGTTGCTGGATTGATAACTATTATTGGGCATGTAGAGTCAGATATGCCTAATCTCATGGCTTTATCAGAAGAATTTTCTTTGGTACAAAACCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATTGAAGATGTAAAATTGGGGTCTACCGCCAGGAAATCTATACCCCTCTTAGTGGATCTCCTGAGACCAATACCAGAAAGGCCTACTGCTCCACCAGTTGCTGTTAGACTCTTGATATGCATTGCAGATGGAAGTGATAGCAATAAATTAATCTTGGCTGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCCTTGAGTCCTCAAGACTCAACTGAGGCGGCTATTTCTGAGTTATTGAGAATATTATTTTCCAATTCTGACCTTATTAAACATGAAGCATCAACTAATTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTCATGAACTTTTTGATGCCGACAACATTAGAGACTCAGAATTAGCTAAACAGGGCATTCAACCATTGGTTGACATGCTTAACACAACATCAGGTAATGAGCAGGAGGCTGCTCTCATGGCCTTGATCAAGTTAACTTCAGGAAATTCTTCAAAAGTATCTCTTCTTCTTGATGTGGAAGGAAACCCACTTAAATGTTTATACAAAATACTGTCTTCTGCTTCATCTTTGGAACTGAAGAGCCATGCTGCCCAACTCTGCTTTGCTCTTTTTGGCAATAGCAAGATCAGAGCAGATCCAGTTGCCTCAGAATGCCTAGAACCCTTTATATCACTGATGCAGTCTGATTCTGAGACTGCAATAGAATCCGGGGTTTGTGCTTTTGAGAGATTATTGGAAGATGAACAACAGGTAGAGCTTGCAGCAGCCTACAATGTTGTGTATCTCCTTGTGAGCTTGGTTTCTGGTACAAACTATCAGCTTATAGAGGCCGCCATATCTACTCTTATCAAATTGGGAAAAGACAGGACTCCAATTAAACTAGACATGGTGAAAGCTGGCATTATTGATAATTGTCTCAAGCTACTACAATTAGCACCTAGCTCTTTATGCTCCACAATAGCTGAGCTGTTTCGCATTTTAACTAATAGCAGCGCAATTGCAAGAAGTTCAGATGCTGCAAAAATTGTAGAACCACTTTTCCATGTTTTGCTCCGCCGAGATTTCAACTTATGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAACCGCAAAGTCTTGCAACCTTGAAGCTTACTCCAAGCCAAGTTATTGAGCCCTTAATTTCTTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACGGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCCCTCGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCGATAAAAGCATTGGAAAAGATTTCCACAAGTTGGCCAAAGGCAGTTGCTGATGCTGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAGCCACCACATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTCTAACGTATTACATTCCAATGCTGATTACTATTTTAAAGTTCCTGTGGTGGTTCTTGTGAAACTTTTGCACTCAACACTTGAGAGTACAATTAGCATAGCCCTTAATGCTTTAATAGTTCATGACAGAAGCGATGCTTCAAGTGCTGAGCAGATGATGGAAGCTGGAGTTATAGATGCTCTGTTGGACCTTTTAAGATCTCATCATTGTGAAGAAGCATCTGGTAGATTACTAGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTGTCTAAGTATGCTATAGCACCTTTGTCCCAGTATCTATTGGATCCGCAAACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTGGCTTTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGATCTAGTGCCTCTGTTTCTGCATGTCGTGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGGTGGTGGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACCAATAGACGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTTTTGTCTCCAAACACAGAAGTTGCTGCACAAGCCGCTTTACTGATCAAATTTTTGTTTTCTACCCATACATTGCAAGAATATGTGTCAAATGAGTTGATCAGGTCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACCGCCACAATCAATGAGGAGGTTTTGAGAACTCTACATGTGATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGTGGTGAAGCGGCTCAGGACTCTGTACTTGACACATTTTGCTTGCTAAGGCAATCTTGGTCAACTATGCCAATAGATATAGCTAAGTCTCAAGCTATGATTGCTGCTGAAGCCATCCCCATTTTACAAATGCTCATGAAAACCTGCCCTCCTAGCTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAACAAACTATGGGAAGCACTAATGCATTCTGCCGGTTAACAATAGGCAATGGTCCTCCAAAACAAACCAAGGTGGTGAATCATAATACTTCTCCAGAATGGAAAGAAGGATTCACTTGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTGCACATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTTGGAAGAGTCACTATCCAAATTGATAAAGTTGTATCAGAGGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGTAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATTTCCAATGATGACATTTGA 6408 0.4153 MSKSPSHEQRQSIYSASQPGSFNEATGMDDPESTMAKVANFVEQLHANLSSPVEKETITARLLGIARRRKDARAIIGSHAQAMPLFISILRNGTPLAKVNVASTLSVLCKDEDLRLKVLLGGCIPPLLSLLNYESTDARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPKNKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGQENDISVRASAADALEVLSSKSTKAKKVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHATRALANICGGMSALILYLGELSRSPRPDAPVGDIIGALAYTLMVFEEKVDVDEKHFDATQIEDILVTLLKPQDNKLIQERVLEAMASLYGNVCLSKCLIQADSKKVLIGLITMAATDVQEYLILSLTSLCCDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQQASAMALTKLVRVADSAAINQLLALLLGDSPSSKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFIARQDICDSLATDEIVLPCMKLLTSKTQVVATQSARVLSALSRPTKNKAANKMSYIVEGDVKPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALARVLAEGTLEGKQNASRALHQLLKHFPVGDVLKGNTQCRFTVLALVDSLRAMDMDGTDAADALEVIALLARTKQGVNYTYPPWSALAEMPSSLELLVCCLAEGHSLVQEKAIKILSRLCGDQPVVLGDMLSASSKSIGSLANRIMNSSSLEVKIGGSALLICAAKEKKKLSMDSLDASGFLKPLIYSLVEMIKQSCSYSLLEIEVVASKGFMERSSFQEVDEFDIPDPATALGSTIAMWLLSVIASFHIKSKLTIMEAGGLEALSDKLSRHTSNPQAEYEDTEGTWINALLLAILFQDANVILSPVTMRIIPSIALLLRSDEVIDKYFAAQSMASLVCNGNKGIDLAIANSGAVAGLITIIGHVESDMPNLMALSEEFSLVQNPDQVVLDHLFEIEDVKLGSTARKSIPLLVDLLRPIPERPTAPPVAVRLLICIADGSDSNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFSNSDLIKHEASTNSLNQLIAVLRLGSRNARYSAARALHELFDADNIRDSELAKQGIQPLVDMLNTTSGNEQEAALMALIKLTSGNSSKVSLLLDVEGNPLKCLYKILSSASSLELKSHAAQLCFALFGNSKIRADPVASECLEPFISLMQSDSETAIESGVCAFERLLEDEQQVELAAAYNVVYLLVSLVSGTNYQLIEAAISTLIKLGKDRTPIKLDMVKAGIIDNCLKLLQLAPSSLCSTIAELFRILTNSSAIARSSDAAKIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRSDASSAEQMMEAGVIDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVVNHNTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDI 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00175 2135 SUPERFAMILY ARM repeat 1188 1542 IPR016024 -
Gma13g00175 2135 CDD C2 2009 2099 - -
Gma13g00175 2135 Pfam C2 domain 2008 2107 IPR000008 -
Gma13g00175 2135 MobiDBLite consensus disorder prediction 1 28 - -
Gma13g00175 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Gma13g00175 2135 Gene3D - 27 157 IPR011989 -
Gma13g00175 2135 SUPERFAMILY ARM repeat 860 1287 IPR016024 -
Gma13g00175 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Gma13g00175 2135 SMART C2_3c 2008 2104 IPR000008 -
Gma13g00175 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Gma13g00175 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Gma13g00175 2135 Gene3D - 1344 1605 IPR011989 -
Gma13g00175 2135 Gene3D - 368 622 IPR011989 -
Gma13g00175 2135 MobiDBLite consensus disorder prediction 1 30 - -
Gma13g00175 2135 Gene3D - 1610 2007 IPR011989 -
Gma13g00175 2135 Gene3D - 1162 1343 IPR011989 -
Gma13g00175 2135 SUPERFAMILY ARM repeat 1611 2005 IPR016024 -
Gma13g00175 2135 Gene3D - 158 356 IPR011989 -
Gma13g00175 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 15 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Gma13g00175 2135 SUPERFAMILY ARM repeat 82 796 IPR016024 -
Gma13g00175 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Gma13g00175 2135 Gene3D C2 domain 2008 2133 IPR035892 -
Gma13g00175 2135 PANTHER - 15 2133 - -
Gma13g00175 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 459 500 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 1708 1749 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 1288 1329 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 1458 1498 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Gma13g00175 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Gma13g00175 2135 Gene3D - 623 971 IPR011989 -
Gma13g00175 2135 Gene3D - 1001 1143 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00175 Gma-Chr13 10555207 10564789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00175 432 689 U-box Gene Family AT2G23140 27.612 1.42e-10 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00175 - - gmx:100796864 3996.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00175 13 10555207 10564789 Gma13g00175 13 10555207 10564789 ECH