Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00172 ATGTCGTCGACGCCGCAGGACTCTGTCAAAACGACGGCGTCGGCGAAGAACACCGCGTTCGACGCGGAAGCGGCGTCGCGGCTCGTGAATGAGCTTAGGCGAAACTTCGCTTCGAACAAAACGCGCAGTTACGAGTGGAGACTGTCGCAGCTCAACGCGCTCGAGAAACTCGTCGTCGTTCACGAGCAGGAGATCGTCGACGCGCTCCGAAACGACCTCGGCAAGCCGCCACTCGAAACCGTTGCATACGAGATTGCTATGTTGAAAAACTCATGTAGAATCGCACTCAAGGAATTGAAACATTGGATGACTCCTGAAAAGGTCAAAACTTCAATCGCAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAACCACTGGGGGTTGTGTTAGTCATCTCTGCATGGAACTACCCATTCTTGTTGTCACTTGATCCAGTCGTTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAAGCTTATCGGAGACTACTTGGATAACTCATGTATTAGAGTTGTTGAGGGAGCAGTTGATGAAACATCTGCATTACTGCAGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGACGAGTGGCACGCATTGTGATGGCTGCTGCTTCAAAACACCTAACACCAGTTGTGCTGGAGCTTGGAGGAAAATCTCCAGTTGTTGTTGATTCAAATATCAATTTAAAGGTAGCAACAAGACGAATAATTGCAGGAAAGTGGGGTTCTAATAATGGGCAAGCCTGCATTTCTCCAGATTATATTATAACAACTAAAGACTATGCTCCCAAGTTGGTGGATGCGCTAAAGACTGAATTGGAGAAATTTTATGGAAAGAACCCATTGGAATCAAAAGATTTGTCCCGTGTTGTGAACTCCAACCACTTTAATCGGTTGACAAAGCTCTTGGATGATGATAAGGTTTCTGGTAAGATTGTTTATGGAGGCCAAAAGGATGAAAACAAATTGAAGATTAGCCCCACTGTTCTATTGGATGTCCCACGGGACTCTTTGATTATGAATGAGGAGATATTTGGTCCTTTACTTCCCATCCTCACGGTTGACAAACTAGAAGAAAGCTTTGACGTGATCAATTCAGGACCCAAGCCTCTCGCTGCATATATATTTACAAATAACAAGAAGCTCAAGGAGCAATTTGTTATGACTATTTCAGCTGGTGGTTTGGTTGTTAATGACACTACTTTACATCTTGCAGTTCATACTTTACCATTTGGTGGAGTTGGTGAGAGTGGAGTGGGTGCATACCATGGGAAATTCTCATTTGAAGCTTTTAGCCACAAAAAAGCTGTTCTCTATCGCAAATTTATTGGTGATGCTCCAGTAAGGTACCCACCATACACAAATACAAAGATGAGATTGCTGAAAGCTATCATAGGTGGTGGCATACATGGTATTGTTCGTGCCCTGTTTGGTTGGTGA 1491 0.44 MSSTPQDSVKTTASAKNTAFDAEAASRLVNELRRNFASNKTRSYEWRLSQLNALEKLVVVHEQEIVDALRNDLGKPPLETVAYEIAMLKNSCRIALKELKHWMTPEKVKTSIATFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPATSSLLAKLIGDYLDNSCIRVVEGAVDETSALLQQKWDKIFYTGNGRVARIVMAAASKHLTPVVLELGGKSPVVVDSNINLKVATRRIIAGKWGSNNGQACISPDYIITTKDYAPKLVDALKTELEKFYGKNPLESKDLSRVVNSNHFNRLTKLLDDDKVSGKIVYGGQKDENKLKISPTVLLDVPRDSLIMNEEIFGPLLPILTVDKLEESFDVINSGPKPLAAYIFTNNKKLKEQFVMTISAGGLVVNDTTLHLAVHTLPFGGVGESGVGAYHGKFSFEAFSHKKAVLYRKFIGDAPVRYPPYTNTKMRLLKAIIGGGIHGIVRALFGW 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00172 496 SUPERFAMILY ALDH-like 27 470 IPR016161 GO:0016491
Gma13g00172 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 33 452 IPR016162 GO:0016491
Gma13g00172 496 PANTHER ALDEHYDE DEHYDROGENASE 13 496 - -
Gma13g00172 496 PANTHER ALDEHYDE DEHYDROGENASE 13 496 IPR012394 GO:0006081
Gma13g00172 496 PIRSF ALDH 7 487 IPR012394 GO:0006081
Gma13g00172 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 234 434 IPR016163 GO:0016620
Gma13g00172 496 Coils Coil 51 71 - -
Gma13g00172 496 Pfam Aldehyde dehydrogenase family 13 454 IPR015590 GO:0016491
Gma13g00172 496 CDD ALDH_F3FHI 25 456 - -
Gma13g00172 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 230 237 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00172 Gma-Chr13 10483351 10489994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00172 85 495 Aldehyde Dehydrogenase Gene Family AT1G44170 74.209 0.0 660
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00172 13 10483351 10489994 Gma13g00172 13 10483351 10489994 ECH