Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00162 ATGGACTTGAAAGAAAATTGTACTTATGTCATGCACAATTTTAAAGTGATAAAAAACAATGGTCAGTATAGAGTGTGTGATCATCAATTTAAATTGGTGTTTATTGGGGTTACTGTTGTGAGGGAGTGTGTTCTAGGGGACATCCCTTTTAGAAAATACAGGTTTGCTGGATTTGCAGATGTTGTGGCTGGCCAGTTTGAACGTGGACTATTTGTTGATGTTATTGGTGTTGTGGAGGAGGTTGTCTTTCGGCAAGTTTCAGGAAAAGGTAGAAGGGTAGTCTTCAAATTAAAGGACTTGAGGCTTGCAGAGTTGGGCATTGAGGCCCAGTCAGGTTTTAAATCCCATGGTGAAGGGAGTACACAACTTTTAGGTTCTATCCAATTATCATCAAAAGAATCATTCTTTGGCAAGGCTGAGGCAAAGACTATTGTTGACATTAACACCATCTCTGAAAAATTGTTTGTCACTGTTGGCACAATTACTAGGATTGTTCTGGACAATCATTCATGGTGTTATACAACTTGCATTCAGTGCCATAAAAAAAGGGATGCAGAGATGGCGCCCTTTAGATGTGCATGCAGCAAATACAATAAGGAAGTTGTGCTTAGGTATAGGCTTGAGGTGATGATCAACCAAGGAAATGAAAGCACAAAATTCCTGCTTTGGGACCGTGAATGCAGTGAATTAATTGGCCAATCAGCTGATGCAGTTAATAAGCTTAAAATTGAAGATGGTGATGTTGATTTGAATGCTTCACCCCAAGCACTTGATAAGCTGTTGGGTCATGAACTTGCTTTCAAGATAAAGGTGCAACCCAAGTTCAGGAATTCTGCTGTTTTGAAGTGTTCAGCTGACTCGAGCATGATAAATGCTGTGATGGATATGCTAGCTGATGCTGAGACATCTTCAAAAATGGATATCCCGGTTTCTGATTTCAATCATTCTGCTCAACATGAATCTCAATCCCTCTCTGTGACAGCAGATCATGATTCCATGCTTGGACTTGCCTTGACGCCTACAAAGCGGCAGACATTTCAGGATTGTGATGATGAAGCAGGGACCTCTCAAATTTAA 1077 0.4048 MDLKENCTYVMHNFKVIKNNGQYRVCDHQFKLVFIGVTVVRECVLGDIPFRKYRFAGFADVVAGQFERGLFVDVIGVVEEVVFRQVSGKGRRVVFKLKDLRLAELGIEAQSGFKSHGEGSTQLLGSIQLSSKESFFGKAEAKTIVDINTISEKLFVTVGTITRIVLDNHSWCYTTCIQCHKKRDAEMAPFRCACSKYNKEVVLRYRLEVMINQGNESTKFLLWDRECSELIGQSADAVNKLKIEDGDVDLNASPQALDKLLGHELAFKIKVQPKFRNSAVLKCSADSSMINAVMDMLADAETSSKMDIPVSDFNHSAQHESQSLSVTADHDSMLGLALTPTKRQTFQDCDDEAGTSQI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00162 358 PANTHER REPLICATION FACTOR A 1, RFA1 3 254 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma13g00162 358 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 3 254 - -
Gma13g00162 358 SUPERFAMILY Nucleic acid-binding proteins 140 277 IPR012340 -
Gma13g00162 358 CDD RPA1_DBD_C 138 287 IPR013955 -
Gma13g00162 358 Gene3D - 1 43 IPR012340 -
Gma13g00162 358 Pfam Replication factor-A C terminal domain 157 274 IPR013955 -
Gma13g00162 358 Gene3D - 125 295 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00162 Gma-Chr13 8815143 8817270 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00162 154 249 Core DNA Replication Machinery Family AT5G08020 32.653 1.00e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00162 - - gmx:113001219 560.066