Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00161 ATGAAGAAGCTTTCTCTTTACGCTTGTTTACTCACTTTGAGTCTGCTGATTTTTCTTCCCCATATCAAAGCAAGTCAAGCTAATAAACTTGATGAGTTGATCCTATCTAGGAGCTCACATAATCCTCCTGTGACCCTTTCTTGGGCAGAGGAAGATGCATTGAAAATGCATTCTGCTGCTTATGTTGCGCCCCAAGAGGGACTAAGGCAAGCTGACAAGATTGTCACACTGCCTGGCCAGCCACATGGGGTGAACTTTGACCAATATTCAGGCCATGTCACAGTTGATCCAAAGACTGGAAGATCACTTTTCTATTATTTTGTTGAGTCTCCACATAACTCTTCAGCTAAACCTTTAGTATTGTGGCTCAATGGAGGACCAGGTTGTTCCTCATTGGGGTATGGGGCATTTGAGGAGCTGGGACCCTTTAGAGTCAACTCTGATGGCAAAACACTATTTCATAACAAATATGCTTGGAATGAAGTGGCAAATGTGCTGTTCTTGGAATCCCCTGCTGGAGTGGGCTTTTCCTACTCAAACACTACCTCTGACTATGATCGTTCAGGAGATAAGTCTACTGCAAAAGATGCCTATGTTTTCCTGATCAATTGGCTAGAGAGGTTTCCAGAGTACAAAACCCGCGAGTTTTACATAACTGGAGAGAGCTATGCTGGCCATTATGTGCCTCAGCTTGCATACACTATTTTGGTGAACAATAAATTCAGTCAACAAAGCATTAACCTCAAAGGCATTGCTATAGGGAATGCTTTGATTGATGATGTTACAACTATCAAGGGGATATTTGATTACTTTTGGACTCATGCTTTGAACTCAGATCAAACACATCATTTGATTAAGAAGTATTGCGACTTCACTTCGGAAAATATTTCAGCAGCATGTATTAATGCAACAATAAGTTCCATACTTGAGAAAGGAAGCATAGACTCCTCTAACATCTATGCTCCACTGTGTTATGACTCTTCTCTGAAAAATGGATCTACTGGTTCTGTATATGATTTTGACCCGTGTTCTGCCTACTATGTGGAAGCCTATCTAAATAGGCCAGAGGTCCAAAAAGCTCTTCATGCAAAACCCACAAATTGGACCCATTGCAGCGGCTTTGACTGGAAGGACAGCCCAACTACCATCCTACCCATCATTGAGTATCTCATTGCTAGCCACATTAAATTGTGGATATACAGTGGTGATACAGATGCAACGGTCCCAGTCACATCTTCCAGATATTCAATCAACACCCTGAGGCTCCCTATTCAGGTTGATTGGCATCCATGGTATTCTGGAAATGAGGTTGGAGGATATGTGGTGGGATACAAAGCAGTGACGTTTGTTACAGTAAGAGGAGCAGGACATTTTGTTCCAAGCTGGCAACCAGCCCGATCTTTGACCATGATCTCATCATTCCTCTCTGGAACCCTGCCTCCTGCTTCACCATACGATGGATTCTAA 1467 0.4274 MKKLSLYACLLTLSLLIFLPHIKASQANKLDELILSRSSHNPPVTLSWAEEDALKMHSAAYVAPQEGLRQADKIVTLPGQPHGVNFDQYSGHVTVDPKTGRSLFYYFVESPHNSSAKPLVLWLNGGPGCSSLGYGAFEELGPFRVNSDGKTLFHNKYAWNEVANVLFLESPAGVGFSYSNTTSDYDRSGDKSTAKDAYVFLINWLERFPEYKTREFYITGESYAGHYVPQLAYTILVNNKFSQQSINLKGIAIGNALIDDVTTIKGIFDYFWTHALNSDQTHHLIKKYCDFTSENISAACINATISSILEKGSIDSSNIYAPLCYDSSLKNGSTGSVYDFDPCSAYYVEAYLNRPEVQKALHAKPTNWTHCSGFDWKDSPTTILPIIEYLIASHIKLWIYSGDTDATVPVTSSRYSINTLRLPIQVDWHPWYSGNEVGGYVVGYKAVTFVTVRGAGHFVPSWQPARSLTMISSFLSGTLPPASPYDGF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00161 488 Gene3D alpha/beta hydrolase 69 326 IPR029058 -
Gma13g00161 488 Pfam Serine carboxypeptidase 78 477 IPR001563 GO:0004185|GO:0006508
Gma13g00161 488 Gene3D - 383 477 - -
Gma13g00161 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Gma13g00161 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Gma13g00161 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Gma13g00161 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 447 460 IPR001563 GO:0004185|GO:0006508
Gma13g00161 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 18 482 IPR001563 GO:0004185|GO:0006508
Gma13g00161 488 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Gma13g00161 488 SUPERFAMILY alpha/beta-Hydrolases 71 479 IPR029058 -
Gma13g00161 488 Gene3D - 343 374 - -
Gma13g00161 488 ProSitePatterns Serine carboxypeptidases, histidine active site. 447 464 IPR033124 GO:0004185
Gma13g00161 488 PANTHER CARBOXYPEPTIDASE 18 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00161 Gma-Chr13 8809803 8813908 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00161 351 477 Calmodulin-binding Proteins AT2G22960 30.303 1.06e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00161 K16297 - gmx:100778342 1000.73