Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma13g00160 | atgcTCTTGAAGACTCCTTCGAGCAAAGTGTATGGCATTTTGGCTGTGAAAAACATCCCAGATCCCATCACTCCCAATTATGAAAAATTCATCTTCTTTTGTCAATCCCCTCCACCACGGGACAAAACAACACGACAGTCTACATGTAACATTATGTTAGATGAAGGGTTCATTGCTAGGTTAGGAGATTTTGGTTTAGCGAGGCAAACGGAGCATGACAAGTCTCCTGATGCCACTATGGCTGCTGGGACAATGGGGTACCTTGCACCTGAGTACGTGCTTACTGGTAGAGCCTCGGAGAAAACTGATGTGCTTAGCTATGGTGTTGTGGTTCTTGAGGTTGCCAATGGCAGGAGGCCTATTGAGAAAGATGCTCCTGCTGCTGGGAATGGTAAAGTTGGAATTAGCAGCAATTTTGTAGAATGGATTTGGAGTTTGCGTCAAGAAGGTAAGTTGCTAATAGTAGCTGATCCAAGACTTGAAGGCGAGTTTGAGGAAGGGGAGATGAGGAAGGTACTCTTGGTTGGATTAGCTTGCTCACACCCTGATTCAATTGCAAGACCTACTATGAGGGGTGTGGTTCAAATGCTGTTGGATGAGGCTGAAGTGCTTATTGTCCCTAGAACCAAACCGTTTACTAGTTACAGTACTTCTTAA | 657 | 0.446 | MLLKTPSSKVYGILAVKNIPDPITPNYEKFIFFCQSPPPRDKTTRQSTCNIMLDEGFIARLGDFGLARQTEHDKSPDATMAAGTMGYLAPEYVLTGRASEKTDVLSYGVVVLEVANGRRPIEKDAPAAGNGKVGISSNFVEWIWSLRQEGKLLIVADPRLEGEFEEGEMRKVLLVGLACSHPDSIARPTMRGVVQMLLDEAEVLIVPRTKPFTSYSTS | 218 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma13g00160 | 218 | ProSiteProfiles | Protein kinase domain profile. | 1 | 204 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Gma13g00160 | 218 | PANTHER | L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1-LIKE | 48 | 218 | - | - | |
| Gma13g00160 | 218 | Pfam | Protein kinase domain | 50 | 125 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Gma13g00160 | 218 | Gene3D | Transferase(Phosphotransferase) domain 1 | 47 | 217 | - | - | |
| Gma13g00160 | 218 | SUPERFAMILY | Protein kinase-like (PK-like) | 50 | 214 | IPR011009 | - | |
| Gma13g00160 | 218 | PANTHER | - | 48 | 218 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma13g00160 | Gma-Chr13 | 8791739 | 8792600 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma13g00160 | 48 | 218 | Receptor kinase-like Gene Family | AT3G53380 | 68.421 | 4.41e-77 | 243 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_L-LEC | Gma13g00160 | Pkinase | 2.2e-14 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma13g00160 | - | - | gmx:100815895 | 310.457 |