Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00119 ATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAACTTATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTTAAGAATGATGGTCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTAATTTGCATGAACTGCCTTTTAAGGAATTTGGATTTGTTGAATTTGCAAATGTTGTTGCTGGCAATTTTGTGTCTGGCCTGTTGGTTGATATTATTGGGGTCGTTGATCAAGTGGTCTTTCGGCATGTTTCAACGAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAATTTTGTCTTGCACACTTTGGGAGAATTACTGTACTCAGTTCCTATCCTATTTGAATGAACGTGGGGATGATGGGCCGATGGTTATTATATTGACACATGCCAGAATAAAAGATGCACAGGGTAATTATCCAGCTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTGGAAATTCAAGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCGAGTTTTGCTACCTGGCGATCAAGCAAGCTCACAAGTTTCAGGGGGAAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGCTGAAGTCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGACGTTGTTTGTGTTACGGTGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTGTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGTGGATGTGGCAAGGATAATGATCAGCCTGTTCTAAGGTATAGAGTTGAAATCATGGTTACCCAAAACAATGAGAGTGGCAAATTTTTGCTCTGGGACTGTGAATATGCTGAATTCATTGGTCAAACAGCTGATGATGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGCCAGGATTCAATCAAGATTCAAAAATGCAGTTGTACTTAGATACTCAAAAGACCTGGATTTGATCAATGCAGTTCTGGAGATGCTGCCTGATAGTGAGCAATCTCTGTTTGTCACAGCTGACCATGATCCGGTTGCGGGATTGCCTTTAACACCCAAAAAGCGGATGTCATCTGATGAAGCCGATGATGAGTTAAGGAGCTCTCAAATTTCGCCAGCCCAACTATCGTCTAACAAATTAACAAGACATTCTCATAGGAGCTAA 1362 0.3928 MVFVDSEGDQIHAICKSDHLKSWKTYLKENCTYVMHNFKVVKNDGQFRVCEHEYKLFFIGVTVVREANLHELPFKEFGFVEFANVVAGNFVSGLLVDIIGVVDQVVFRHVSTKNTRVVFRMKDLSGEILSCTLWENYCTQFLSYLNERGDDGPMVIILTHARIKDAQGNYPASVSNSFKASKLLINDPILEIQEFKERLLDLGVEVSRVLLPGDQASSQVSGGSQLSSKDSFLSKAEVKTILEINAISEDVVCVTVGTISKIVMDNHSWCYPACAQCHRKTDIQTGPFTCGCGKDNDQPVLRYRVEIMVTQNNESGKFLLWDCEYAEFIGQTADDVNRVKIEDGDLDLNASPQALDKLLGHVLAFKARIQSRFKNAVVLRYSKDLDLINAVLEMLPDSEQSLFVTADHDPVAGLPLTPKKRMSSDEADDELRSSQISPAQLSSNKLTRHSHRS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00119 453 PANTHER REPLICATION FACTOR A 1, RFA1 16 328 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma13g00119 453 CDD RPA1_DBD_B_like 97 199 - -
Gma13g00119 453 SUPERFAMILY Nucleic acid-binding proteins 237 373 IPR012340 -
Gma13g00119 453 SUPERFAMILY Nucleic acid-binding proteins 1 66 IPR012340 -
Gma13g00119 453 SUPERFAMILY Nucleic acid-binding proteins 77 199 IPR012340 -
Gma13g00119 453 Gene3D - 1 66 IPR012340 -
Gma13g00119 453 Pfam Replication factor-A C terminal domain 257 368 IPR013955 -
Gma13g00119 453 Pfam Domain of unknown function DUF223 1 87 IPR003871 -
Gma13g00119 453 CDD RPA1_DBD_C 235 381 IPR013955 -
Gma13g00119 453 Gene3D - 218 391 IPR012340 -
Gma13g00119 453 MobiDBLite consensus disorder prediction 412 453 - -
Gma13g00119 453 CDD RPA1_DBD_A_like 1 64 - -
Gma13g00119 453 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 16 328 - -
Gma13g00119 453 Gene3D - 71 205 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00119 Gma-Chr13 4103106 4105496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00119 3 347 Core DNA Replication Machinery Family AT5G08020 24.860 6.49e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00119 - - gmx:121173258 821.231