Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00101 ATGGCCATGGCCATGGCTGAGGCTTCAAGAATCACGTTACACTCCACTCTCCTCCCTTTTTTTACCCCCAAAACCCACGTTGGTCACCGCCACTTAAGCCTCTCGTCATCACGCAAGCACCAAGTCCAGTGCTCGGTGTCTGCAGGCGCGGCGGCTCAGACGAACCCAGTGGCTTGGGGCTGCGAGATTGACTCGCTGGAGAACTCTTCGGCTCTGCAGAGATGGCTGTCGGAGTCGGGGCTTCCGCCGCAGAAGATGGGAATAGAGAGAGTGGAGGTGGGAGAGAGAGGGCTGGTTGCTTTGAAGAACATTAGGAAAGGGGAGAAACTACTCTTTGTGCCTCCCTCACTTGTCATTACTCCAGATTCTGAGTGGAGCTGCCCCGAAGCTGGTGAAGTATTGAAAAGGAATTCAGTGCCAGATTGGCCTTTGCTTGCAACTTACCTCATAAGTGAAGCTAGCCTCATGGAATCTTCAAGATGGAGCAATTATATATCAGCCTTACCTCGTCAACCTTACTCACTTCTTTACTGGACGCAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAAATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTATTCCCTGATGAGGTGTTCAACATAGAGTCCTTCAAATGGTCATTTGGTATTCTTTTCTCCCGCTTGGTTCGGTTACCCTCAATGGGTGGAAATGTTGCCTTGGTTCCTTGGGCTGATATGCTGAATCATAGTTGTGATGTGGAGACATTTTTGGATTATGATAAGACATCAAAGGGAATTGTCTTCACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAATGGGGAGCTTTTGTTATCTTATGGATTTGTTCCAAAGGAAGGCGCTAATCCTAGTGATTCAGTTGAGTTGTCACTGTCACTGAAGAAATCTGATGCGTCCTATAAGGAGAAGTTAGAGCTGTTGAAGAATTATGGATTATCAGCATCTCAGTGTTTTCCTATACAGATTACTGGTTGGCCTTTGGAATTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAGATTTTGAAGAGATGGCTGCTGCAGCATCAAATAATACCACCTCCAAGAAGGATTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGTTGTGAATCCAGCATATCAAAATACAACAAGTTCTTACAGGCAAGTGGATCACTGGATCTGGATGTGACTTCTCCTAAACAACTCAACCGAAGGCTCTTTCTGAAACAGCTAGCTGTGGACTTGTGTACTAGTGAGCGAAGGATATTATTTCGTGCTCAATACATACTGCGAAGAAAACTGAGGGACATGAGGGCTGGTGAATTAAGGGCCCTAAAAATATTCAACGGTTTCCGGAATCTTTTCCAATGA 1500 0.4447 MAMAMAEASRITLHSTLLPFFTPKTHVGHRHLSLSSSRKHQVQCSVSAGAAAQTNPVAWGCEIDSLENSSALQRWLSESGLPPQKMGIERVEVGERGLVALKNIRKGEKLLFVPPSLVITPDSEWSCPEAGEVLKRNSVPDWPLLATYLISEASLMESSRWSNYISALPRQPYSLLYWTQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPDEVFNIESFKWSFGILFSRLVRLPSMGGNVALVPWADMLNHSCDVETFLDYDKTSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGANPSDSVELSLSLKKSDASYKEKLELLKNYGLSASQCFPIQITGWPLELMAYAYLAVSPSSMRGDFEEMAAAASNNTTSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRAQYILRRKLRDMRAGELRALKIFNGFRNLFQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00101 499 CDD SET_RBCMT 79 314 IPR044431 GO:0016279|GO:0018022
Gma13g00101 499 Gene3D set domain protein methyltransferase, domain 1 34 313 - -
Gma13g00101 499 PANTHER - 30 294 - -
Gma13g00101 499 SMART set_7 84 306 IPR001214 GO:0005515
Gma13g00101 499 Gene3D - 319 486 IPR036464 -
Gma13g00101 499 Pfam SET domain 96 300 IPR001214 GO:0005515
Gma13g00101 499 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 30 294 - -
Gma13g00101 499 ProSiteProfiles SET domain profile. 84 300 IPR001214 GO:0005515
Gma13g00101 499 PIRSF RMT_SET 1 496 IPR011192 GO:0009507|GO:0030785
Gma13g00101 499 SUPERFAMILY SET domain 70 317 IPR046341 -
Gma13g00101 499 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 330 495 IPR036464 -
Gma13g00101 499 Pfam Rubisco LSMT substrate-binding 333 466 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00101 Gma-Chr13 3128884 3135073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00101 71 269 NAC Transcription Factor Family AT3G56570 21.500 1.56e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma13g00101 SET 2.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00101 - - gmx:100803319 982.245