Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00097 ATGGCTTCCAGGAAATTCGACAACCCTCACTCCGGCGACGGCGCCAGTCCAGGCAAAATCTTCATCGGAGGGTTAGCCAAAGACACCACCCTAGAGACGTTCGTGAAGTACTTTGAGAAGTACGGGGAGATAACGGACTCCGTTATAATGAAAGACCGTCACACGGGTCGGCCAAGGGGATTCGGCTTCATCACCTACGCCGATCCCTCCGTCGTTGACCAAGTCATTCAGGAGAACCACGTCGTCAACGGCAAGCAGGTCGAGATTAAGAGGACCATTCCCAAGGGCTCTTCGCAGGCTAATGACTTCAAAACCAAGAAGATTTTCGTCGGCGGCATTCCAACTTCTGTGTCTGAAGATGAGCTCAAGAACTTCTTCTCCAAGTATGGGAAAGTGGTGGAGCATGAGATAATACGGGACCACACCACGAAGCGATCCCGGGGTTTTGGCTTTATAGTTTTTGACAGTGAAAAGGTTGTGGATAATATTTTGGCAGATGGGAACATGATTGATATGGGTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGTTTTGGTGGTTTTGGCGATTCTTATGGAAGTTTTGGTGGTAGCGGGTATGGTCCTGGTTCTTATAGGTCACTTGGAGGTTTTGGGGGTAGGCTTGGTGATTATGGTGGGTATGGGGCTGGAGATGAATTTGGTGGTAGTTTTGGGGGTTATGGTGGTGCTGGTGCTGGTGGCTATGCTGGTTTTCGAGGAGAATCATCGTTTGGCTACTCTAGTCGCTATGGATCGTACATGGGTGGCCTTGGTGCTGGTTATGGTGGCAGCGGGTTAGGCGCATATGGACGGGGTGGTGGGGCTTATGGAACCTATGGTGGTCCAAGCGCTGGTGGGGGTTATGAATCAGGTCCCGGTGCTGGTTATGGAGGAGCAGGAGGTGGAATGTATCCCAGTAGGGGAAGCTATGGTGGCAGTAGTCGTTACCATCCTTATGCAAGATAG 1059 0.5052 MASRKFDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHVVNGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMGGTQVEIKKAEPKKSSNPASLPPFASDSRARSYNDGFGGFGDSYGSFGGSGYGPGSYRSLGGFGGRLGDYGGYGAGDEFGGSFGGYGGAGAGGYAGFRGESSFGYSSRYGSYMGGLGAGYGGSGLGAYGRGGGAYGTYGGPSAGGGYESGPGAGYGGAGGGMYPSRGSYGGSSRYHPYAR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00097 352 Gene3D - 18 96 IPR012677 -
Gma13g00097 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Gma13g00097 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 85 IPR000504 GO:0003723
Gma13g00097 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Gma13g00097 352 Gene3D - 97 218 IPR012677 -
Gma13g00097 352 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 352 - -
Gma13g00097 352 SMART rrm1_1 107 180 IPR000504 GO:0003723
Gma13g00097 352 SMART rrm1_1 19 90 IPR000504 GO:0003723
Gma13g00097 352 PANTHER OS08G0320100 PROTEIN 1 352 - -
Gma13g00097 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Gma13g00097 352 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
Gma13g00097 352 SUPERFAMILY RNA-binding domain, RBD 12 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00097 Gma-Chr13 2941572 2944723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00097 4 177 Eukaryotic Initiation Factors Gene Family AT1G71770 26.562 1.44e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00097 K12741 - gmx:100801373 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00097 13 2941572 2944723 Gma14g00061 14 521133 526054 PCT
Gma13g00097 13 2941572 2944723 Gma02g02871 02 54116901 54121567 PCT
Gma14g00061 14 521133 526054 Gma13g00097 13 2941572 2944723 PCT
Gma02g02871 02 54116901 54121567 Gma13g00097 13 2941572 2944723 PCT