Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00091 ATGGGCTATATATGTGATTTCTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGATGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAAGCGTCATTCACGCACCCTTTTATGTGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTGGGTCATGGCACCTCTACATCTTCTTCAACACACAAGAGACAGGCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCTGAACTGTCTTCAATATGGTCATTTGTGTTAGATATCGCTGCCATAAGTGAATCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAAGAGTGTTGGGGTTCCTCCAGAGGGCCAGAATGTGTCTGGTTCAGATGAAGTTACTGATCAACCTGCTTTGGACAAGTCTTTGGTTGGTACATCTTCAATGCCTGAATCAAGCTCCAAACCTCGTATTCTGGACCAGCCAGCTAGACCTGCCAATGAATGTCTTTCAAAGTTATACTGTCCTGCTACAAAATTCCCCGCATTATGTGAAAATGATAATCTGTATGATGATTTCAACATGGATGAAGTGGATCTAAATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCTGAAGAGCTATTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAAGACATGTCTGCTGGAGATTTCAGTTGTGAGGATGCTATTGCTGCTGAGGGGTCGTCGGTTGGACAGGTCAATGTAATGCAACCAGCTTGCAGCAATGCAGCATCTGCAGATTCCATTTTGAGTACTAAAACTGAACCAATTCTTTGTTTTACGGGAAGGCAAGCTCAATCAAACCTTTCTTTTTCTGGCGTTACCGGAGACAGTAGTGCTGGAGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCTGAGAATTCCCTACAATCAGCCAACCGTAGTAATGCTGTCATGCGGTACAAGGAAAAGAAGAAGACACGGATGTTTGACAAAAAAGTGAGGTATGCCTCTCGCAAGGCAAGGGCTGATAAGCTTCTGAATGAGGGGCCTTGA 1170 0.4368 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLDIAAISESTCEQELGLMSINENKSVGVPPEGQNVSGSDEVTDQPALDKSLVGTSSMPESSSKPRILDQPARPANECLSKLYCPATKFPALCENDNLYDDFNMDEVDLNLENYEELFGMALSHSEELFENGGIDSLFGTKDMSAGDFSCEDAIAAEGSSVGQVNVMQPACSNAASADSILSTKTEPILCFTGRQAQSNLSFSGVTGDSSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSANRSNAVMRYKEKKKTRMFDKKVRYASRKARADKLLNEGP 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00091 389 MobiDBLite consensus disorder prediction 132 154 - -
Gma13g00091 389 CDD Bbox1_BBX-like 4 47 - -
Gma13g00091 389 Pfam CCT motif 352 383 IPR010402 GO:0005515
Gma13g00091 389 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gma13g00091 389 SMART bboxneu5 48 90 IPR000315 GO:0008270
Gma13g00091 389 CDD Bbox1_BBX-like 47 90 - -
Gma13g00091 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 382 - -
Gma13g00091 389 ProSiteProfiles CCT domain profile. 352 389 IPR010402 GO:0005515
Gma13g00091 389 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Gma13g00091 389 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 382 - -
Gma13g00091 389 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00091 Gma-Chr13 2858648 2863177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00091 1 382 C2C2-CO-like Transcription Factor Family AT3G07650 55.696 1.55e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma13g00091 CCT 1.7e-10 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00091 - - gmx:100800832 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00591 20 20279495 20287445 Gma13g00091 13 2858648 2863177 GST