Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00090 ATGGGCCTGTCAAGTCTCCCAGCACCATCTGAAGGAGTGTTATGTGTGCTTCTTGTAAACACTGCCTTGTCTATATCCATATTCAAAGGCATTGTTAGGACAATTCTACAAATTGTCGGTATCCGCGTTTCGTCGTTGTCTCCTTCACCAGACATCTCCCGAAACCCACCTGAGCCATTAGAATTCAACCTCAGCCCCTCGGAGGGTTTCATTGAAGAGTTCAGAAGCAGGACACCAACACTTAGGTTTGGCAGCATGTGTGGCAGTAAACAACCTCAACATGAATGTTGTTGTGTGTGTCTCACAAAGTTTGAACCAGAATCTGAGATAAACTGTTTATCATGTGGCCATATTTTTCACAAAGTGTGCATGGAGAAGTGGTTGGACTATTGGAACATTACATGCCCACTTTGCAGGACTTCCTTGATGCCTGAAGATGATGCATCTTGCTTTTGGTAA 459 0.4423 MGLSSLPAPSEGVLCVLLVNTALSISIFKGIVRTILQIVGIRVSSLSPSPDISRNPPEPLEFNLSPSEGFIEEFRSRTPTLRFGSMCGSKQPQHECCCVCLTKFEPESEINCLSCGHIFHKVCMEKWLDYWNITCPLCRTSLMPEDDASCFW 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00090 152 Pfam Ring finger domain 97 139 IPR001841 -
Gma13g00090 152 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Gma13g00090 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 145 IPR013083 -
Gma13g00090 152 ProSitePatterns Zinc finger PHD-type signature. 96 138 IPR019786 -
Gma13g00090 152 PANTHER - 1 152 IPR044249 -
Gma13g00090 152 SMART ring_2 97 138 IPR001841 -
Gma13g00090 152 SUPERFAMILY RING/U-box 91 144 - -
Gma13g00090 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00090 Gma-Chr13 2813684 2815451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00090 1 146 C3H Transcription Factor Family AT2G04240 59.740 1.98e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00090 K16285 - gmx:100306440 324.709