Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00066 ATGCCAAGAAATCAGCATATTTCCTGGTTAGATACTCTAGTCCTACACGGAGAAAAGCTTTTCCACAATAAACACTGCTCACAAAGATCAAAGAGAAAAAGGGCTGCTCTGAATGTAGAAAATTCAGAAACTTTACCTACTGGCCAAGGAGTAACTAATAGCAAGGTATCTCCTTATCACTGCAATTATTGTAACAAAGATATTTCGGGGAAGATTCGCATCAAGTGTGCTGTTTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTCGGTGCTGAGGTAACACCTCACAAAAGCAATCATCCTTATCGGATTATGGATAATCTGTCTTTTCCACTTATATGTCCAGATTGGAATGCGGATGAAGAGATGTTACTTCTAGAGGGTATTGAAATGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATATATTGGAACAAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCACCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAAAGAGGAACTCTTTGCCATGATGAAGGGGCATGAAGCCAAGAAAGAATTTTCTCTAACTACAGAGCTTACTCTGAAAGAAGAACCTCCCTTTGTTGATGGAATAAACTATGAAGAATCAAAGAAGGAAGAAATCAATGATCAAACCATGTCTAGGTTAACCTCAGCATGTGGCAAAGCTTACTCAAGTACAGTTAAGAAGGCTTCCAGCGTGATCCAAAATAATGATGGAGTTAAGGTGGAAGATCGGAGCATTGGAGAGAAGAAACTTAAATTATCAGGGGAAGATAGGCCTTCTATGACAAATTTGAGTGGATACAGTTTTAAGCGAGAGGAATTTGATGTTGAATACGACAACGATGCAGAGCAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTGAAGCTGAATATGAAATGAAACTGCAGGTGCTCCATATCTACTCAAAAAGGTTAGATGAACGGAAGCGCAGAAAGAATTTTATACTTGAAAGAGATTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTACCTGAAGAGCTTCAAATATGTCAGCGTTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAGCATCAAGATTTGCTAAAAAATATTATTGAAGAACACAGGCTTGTCAAAAGAATACAAGATTTACAGAGGACAAAGGAAGCTGAACCAAGTGCCTGTAAAGAAAGTGGTCAGATTGGAACAAGTGCTAAGACATTACAGAGGCCAAATTCTCTCAAAGGAGAAGTTGATAGTAGCCCGCAGGGTCTTCAAAAGGGGACTGCAGCTTTATTTGCTGGTGCCAAGGATTCACCTCCTGCCATACAAGTCTTCACAAGGTCGCTAGAAGAGTGGGATATTAGTGGATTTGCAGGGGCTGAATTACTATCTGAATCTGAGAAAAAGCTTTGTGATGAGATCAGAATACTACCCTCACACTATCTCAACATGCTGCAGACCTTGTCATTAGAGATTTCAAAGGGCAGTGTGACCAAGAAATCCGATGCACATGCACTGTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTACGATATGCTTGTGACAAAAGGAGTTGTGCAAACATAA 1644 0.3948 MPRNQHISWLDTLVLHGEKLFHNKHCSQRSKRKRAALNVENSETLPTGQGVTNSKVSPYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYRIMDNLSFPLICPDWNADEEMLLLEGIEMYGFGNWNEVAEYIGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMGKSKEELFAMMKGHEAKKEFSLTTELTLKEEPPFVDGINYEESKKEEINDQTMSRLTSACGKAYSSTVKKASSVIQNNDGVKVEDRSIGEKKLKLSGEDRPSMTNLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTEAEYEMKLQVLHIYSKRLDERKRRKNFILERDLLYPDPFEKSLLPEELQICQRYKVFMRFHSKEEHQDLLKNIIEEHRLVKRIQDLQRTKEAEPSACKESGQIGTSAKTLQRPNSLKGEVDSSPQGLQKGTAALFAGAKDSPPAIQVFTRSLEEWDISGFAGAELLSESEKKLCDEIRILPSHYLNMLQTLSLEISKGSVTKKSDAHALFKVEPSKVDRVYDMLVTKGVVQT 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00066 547 MobiDBLite consensus disorder prediction 414 440 - -
Gma13g00066 547 Gene3D - 113 164 - -
Gma13g00066 547 SUPERFAMILY Homeodomain-like 464 546 IPR009057 -
Gma13g00066 547 Gene3D - 51 107 IPR043145 -
Gma13g00066 547 ProSiteProfiles Myb-like domain profile. 119 162 IPR001005 -
Gma13g00066 547 ProSiteProfiles Zinc finger ZZ-type profile. 56 112 IPR000433 GO:0008270
Gma13g00066 547 MobiDBLite consensus disorder prediction 406 440 - -
Gma13g00066 547 CDD SANT 119 159 IPR001005 -
Gma13g00066 547 ProSiteProfiles SWIRM domain profile. 461 547 IPR007526 GO:0005515
Gma13g00066 547 SUPERFAMILY Homeodomain-like 112 165 IPR009057 -
Gma13g00066 547 SMART sant 115 164 IPR001005 -
Gma13g00066 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 166 IPR017930 -
Gma13g00066 547 SMART zz_5 55 100 IPR000433 GO:0008270
Gma13g00066 547 Pfam Zinc finger, ZZ type 59 99 IPR000433 GO:0008270
Gma13g00066 547 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 21 546 IPR034318 GO:0003713|GO:0006357|GO:0035065
Gma13g00066 547 ProSiteProfiles SANT domain profile. 114 166 IPR017884 -
Gma13g00066 547 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 21 546 - -
Gma13g00066 547 Gene3D - 462 546 IPR036388 -
Gma13g00066 547 SUPERFAMILY RING/U-box 56 122 - -
Gma13g00066 547 ProSitePatterns Zinc finger ZZ-type signature. 61 88 IPR000433 GO:0008270
Gma13g00066 547 CDD ZZ_ADA2 59 107 IPR041983 -
Gma13g00066 547 PIRSF Txn_adaptor_ADA2 46 547 IPR016827 GO:0003713|GO:0006357|GO:0035065
Gma13g00066 547 Pfam Myb-like DNA-binding domain 118 159 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00066 Gma-Chr13 2090114 2106404 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00066 29 544 EF-hand Containing Proteins AT3G07740 52.007 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma13g00066 Myb_DNA-binding 6.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00066 K11314 - gmx:100779424 1090.1