Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00040 ATGCTCCGGCGAGTCCATGGCAGAGGCAACCACGAGAGCAGTGAGCATAGTCCTCGCTCCTACTTCCGTGAGCAGGACTGCTTCCTCCCCATCGCCAACATCAGCTGCATCATGAAGAAAATGCTTCCTTCCAACAGGAAAATCGCCAAGGACGCCAAGGAAACTTTGCAAGAATGTGTCTCTGAGTTCATCAGCTTCGTTACCTGCGAAGTGAGCGATAAGTGTCAGGGAGAGAAGAGGAAGACCATCAACGACGACTGTAATAGGACTGTAACAGTGTTAAAGAAAGAAGAGGGCCTTAATATCGAAAAGATTGAAAAGTGCATGGGAGATCCAGATGCCGATACTGATAATCCTATTTTGAAAGAAGAGCAAGATGCCCAAGTATTGGATCGTGAGGTGATGATACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGGAAAATTGGAGAAAGGTGATGTTCTAA 477 0.457 MLRRVHGRGNHESSEHSPRSYFREQDCFLPIANISCIMKKMLPSNRKIAKDAKETLQECVSEFISFVTCEVSDKCQGEKRKTINDDCNRTVTVLKKEEGLNIEKIEKCMGDPDADTDNPILKEEQDAQVLDREVMIPYCLLLLSIIDNIEENWRKVMF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00040 158 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 10 101 - -
Gma13g00040 158 SUPERFAMILY Histone-fold 25 86 IPR009072 GO:0046982
Gma13g00040 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 85 IPR003958 -
Gma13g00040 158 Gene3D Histone, subunit A 16 86 IPR009072 GO:0046982
Gma13g00040 158 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 101 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00040 Gma-Chr13 1087862 1088889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00040 7 86 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.390 9.98e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma13g00040 CBFD_NFYB_HMF 5.2e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00040 K08065 - gmx:102662907 257.299