Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00034 ATGGAGCGGAAGCAAGGGTTCTTCATTGTGCTCAAAGACGAGGTGGTTTGTGGCCTCTCGTTGGTGCGATCACGCGCCAAGAGCCCTGCCAGGAGTGCATCACCCATATCCTTGCTACTCTGCTATTGCAGGAAGCACCACGTGCCGCCGCCTGAGCTCTTCATTGCGAGATCGAGAAGCCTCAGGCTTGCACGTTATCAATATGACTACTCTGGATATGGGGCATCTACTGGCAAGGAGGTGGTCGATCACTGCAACTTAGAGCTTTACCCCGATTACATCCGCCATCTTTGCAAATTTATCCAAGAAATGGAGAGCATGACAACCGAGAAGACATATATTGATGTTGATGGTCAAGATAGAAATGCAAAAGTTCTCTTTGATGAAGAAAAGAGAGATGCTGCAATTAGGGTTTATGCTAGAGAAACAGAGAACAAAGAGTCTGGGAGCAAGCCCATCGCGCAGTACACGGTGGACGCGCGGCTCTACGCCATCTTCGAGCAGTCCGGTGAGTTCGGGAGGTCCTTCAACTACACTGTCCCTGAGCAGCAGATAATGGCTTACCTTGTCAAAATCCAGTTCGGCGGCTTCATCCAGCCCTTCGGCTCCATGATCGCCATCGACGAGCCCTCCTTCCGCATCCTCGGTTACTCCGACAACGCCCGCAACATGCTCGACATTACTCCGCAGTCCGTGCCTTCGCTCGACGACAAGAATGACGCCGCCTTCACTCTCGGCACCGATGTTCGAGCCCTCTTCACTCACTCCAGTGCCTTACTCCTCAAAAAGGCCTTCTCCGAACGCGAAATTAGCCTCATGAATCCTATCTGGATCCACTCTAGAACCTCGAAAAGGCCTTCGTCCTCGCTTTCTTTGAGTAAAAAGAGAACCAGAAAGTCATTCCCTAGCAAATCTCCTGGGAAAGCATCTACAGAGACACCTGCCAAGGCTTGGTTTAGAGAGCTACCAACTGGAGTATTGGACCCTCTTTCGCTAGAGCAGGTGATGCAATCCCAGTCAGAAGAAGAATGTGCTCAGCTTGTGAGGCTTCTTCCTCCAACAGAAGCTACTTTGCTAGATTGGGCAATAAACTTAATGGCAAATGTTGTTCAAATGGAAAACTTGAACAACATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAGTAATATTAAATCATTTTTTGTTGTAA 1206 0.4884 MERKQGFFIVLKDEVVCGLSLVRSRAKSPARSASPISLLLCYCRKHHVPPPELFIARSRSLRLARYQYDYSGYGASTGKEVVDHCNLELYPDYIRHLCKFIQEMESMTTEKTYIDVDGQDRNAKVLFDEEKRDAAIRVYARETENKESGSKPIAQYTVDARLYAIFEQSGEFGRSFNYTVPEQQIMAYLVKIQFGGFIQPFGSMIAIDEPSFRILGYSDNARNMLDITPQSVPSLDDKNDAAFTLGTDVRALFTHSSALLLKKAFSEREISLMNPIWIHSRTSKRPSSSLSLSKKRTRKSFPSKSPGKASTETPAKAWFRELPTGVLDPLSLEQVMQSQSEEECAQLVRLLPPTEATLLDWAINLMANVVQMENLNNMNARNIAMVFAPNMTQVILNHFLL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00034 401 Pfam RhoGAP domain 316 393 IPR000198 GO:0007165
Gma13g00034 401 PANTHER PHYTOCHROME 130 286 - -
Gma13g00034 401 Gene3D PAS domain 192 301 - -
Gma13g00034 401 SUPERFAMILY GTPase activation domain, GAP 316 394 IPR008936 GO:0007165
Gma13g00034 401 SMART RhoGAP_3 185 400 IPR000198 GO:0007165
Gma13g00034 401 MobiDBLite consensus disorder prediction 283 313 - -
Gma13g00034 401 CDD RhoGAP 316 391 - -
Gma13g00034 401 Gene3D Rho GTPase activation protein 302 398 IPR008936 GO:0007165
Gma13g00034 401 ProSiteProfiles Rho GTPase-activating proteins domain profile. 233 401 IPR000198 GO:0007165
Gma13g00034 401 PANTHER TWO-COMPONENT HISTIDINE KINASE 130 286 - -
Gma13g00034 401 SUPERFAMILY PYP-like sensor domain (PAS domain) 192 291 IPR035965 -
Gma13g00034 401 Pfam PAS fold 187 287 IPR013654 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00034 Gma-Chr13 893620 905685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00034 141 286 Histidine Kinase Gene Family AT2G18790 59.236 5.20e-54 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00034 K12121 - gmx:100799831 226.868