Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00030 ATGAGTCTTCCACAAACTGCAACTAGCCCTCCTCCACATCTGTATCCACAGGAACTTCAGCTGAAGCTTTACCAAACCTTCATATTCTCAATTCCAATACTCTTCTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTCTCTCTTCCACTCCTCACTTGCTTCCTAGGACCATTGCCAATCCACCCACCACCTCTCCCTATCATTCCTCACCTTGTCGTTTGGATCTGACCCTCCATTTCCTGGATAAACTTCCAAGAATTTTGTTTGATGAGGATTTGCTAGCAAGGGATTCACTATGTTGTGTATGTCTGGGGGAATTTGAGCTGAAGGAAGAGTTGGTACAGATACCTTATTGCAAGCACGTGTTCCACTTGGAATGCATACATCATTGGCTGCAATCAAACAGCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAACCCAGCACCGCCTATTAACATTATATCAACAGACCCACCCCAGCAGCATGGTGCTATCATTTCGGACTTCCCATTACAAATTCTATCATTGCCACCTCAGTCACAAGACCATCAAGAAGTTGTTGGTGCTTCCTCAAATGCTGCTAATTTGTCAAGGGAATGA 645 0.4434 MSLPQTATSPPPHLYPQELQLKLYQTFIFSIPILFSIILFLLFYLFYLKRRASSLSSTPHLLPRTIANPPTTSPYHSSPCRLDLTLHFLDKLPRILFDEDLLARDSLCCVCLGEFELKEELVQIPYCKHVFHLECIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISTDPPQQHGAIISDFPLQILSLPPQSQDHQEVVGASSNAANLSRE 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00030 214 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 166 - -
Gma13g00030 214 Pfam Ring finger domain 108 150 IPR001841 -
Gma13g00030 214 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gma13g00030 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 155 IPR013083 -
Gma13g00030 214 MobiDBLite consensus disorder prediction 195 214 - -
Gma13g00030 214 SUPERFAMILY RING/U-box 87 160 - -
Gma13g00030 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 3 166 - -
Gma13g00030 214 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00030 Gma-Chr13 786108 787960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00030 1 214 C3H Transcription Factor Family AT4G10150 32.420 1.34e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00030 K19039 - gmx:100813129 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00657 20 25293616 25295970 Gma13g00030 13 786108 787960 GST