Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02256 ATGGAAAGAGAGTTACTAGAGATAAAGAAGGGACCATGGAGTAGTGATGAAGATGAGGTGCTGTTGAGACACGTCAGCAAATATGGTCCTCGGGAATGGAGCTCCATTCGATCCAAAGGCTTGTTGTCCAGAACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCCAACTTGAAGACAGGATGCAAGTTTACAGCAGAGGAGGAAAGGTTGGTGGTAGAATTGCAGGCACAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCAAGGGAGAACCGACAATGATGTGAAAAACTTCTGGAGCAGTAGGAGGAAAAGGTTGGAGAGGATGTTGCAGAAGCCACCTACGTCAAAGCCGCACAAAAACAACGGAAAAACTCATATTAATCAAGTGGAAGAAATGGTTCCTCCTTGCAGTTCCAATCAGGTGGAGGAAATTCTATCTTACTCTACTTCCTATATGGGAAACACTCAAGTGTTCGAGATGATCAACCTACCAGATTTGATAAAACCAAACTATCAACAATTGGAAAATGATTACCTGAGTGCAGTTGAGGTTGAGGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATTAGGGTACAACTTCCCTCTACTCCCTGAACCTGATCCACTGATGGACTGTCCACTGTTCCCAGAGTGCCAGGACCTTGTTCCTGAGCCCTTTGATCCAATTTTTGTTGACGGGTTCAAGGAGAAAAAATGTTCAGAATGTGTATGCAGCAGCCAGAAGCTTGGGACCAGGTTGCCAACTTTTGGATTGGAAGGAAATTCTCAAAGTGCAAGTTCAAATGGCTTTTTCAAGGACTTCCCGAGCGAGATTTTTGAATACTTTGAGCACATTCCAACCTCGTCAGATCAATGA 906 0.4415 MERELLEIKKGPWSSDEDEVLLRHVSKYGPREWSSIRSKGLLSRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVVELQAQFGNKWAKIATYLQGRTDNDVKNFWSSRRKRLERMLQKPPTSKPHKNNGKTHINQVEEMVPPCSSNQVEEILSYSTSYMGNTQVFEMINLPDLIKPNYQQLENDYLSAVEVEATPLHTVPSFESSLGYNFPLLPEPDPLMDCPLFPECQDLVPEPFDPIFVDGFKEKKCSECVCSSQKLGTRLPTFGLEGNSQSASSNGFFKDFPSEIFEYFEHIPTSSDQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02256 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 53 IPR017930 -
Gma12g02256 301 PANTHER MYB TRANSCRIPTION FACTOR 1 301 - -
Gma12g02256 301 CDD SANT 66 105 IPR001005 -
Gma12g02256 301 CDD SANT 12 57 IPR001005 -
Gma12g02256 301 Gene3D - 65 139 - -
Gma12g02256 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 113 IPR017930 -
Gma12g02256 301 SMART sant 63 111 IPR001005 -
Gma12g02256 301 SMART sant 9 59 IPR001005 -
Gma12g02256 301 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Gma12g02256 301 Pfam Myb-like DNA-binding domain 66 106 IPR001005 -
Gma12g02256 301 ProSiteProfiles Myb-like domain profile. 7 57 IPR001005 -
Gma12g02256 301 Gene3D - 2 63 - -
Gma12g02256 301 PANTHER TRANSCRIPTION FACTOR DUO1 1 301 - -
Gma12g02256 301 ProSiteProfiles Myb-like domain profile. 66 109 IPR001005 -
Gma12g02256 301 SUPERFAMILY Homeodomain-like 7 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02256 Gma-Chr12 43534819 43536668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02256 1 297 MYB Transcription Factor Family AT3G60460 41.390 7.15e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g02256 Myb_DNA-binding 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02256 K09422 - gmx:121173231 626.32