Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02239 ATGGCAAATCTGAACCACGGTGCAACATTCAGAGATGatttcttctacgatgtttttctgagttttagaggtgggacccgttatgggttcacgaatcgtctctacaatgctttgcggcaaaagggaatatacactttcagagatactgaggagcttaggattggagcagacatcagacccgcgcttctgaaggcaatagaaaattcaagaatgtcaatggttgtgctctgtgaagactacgcgtcttctacttggtgtcttgatgaacttgccaagatcattcaatgctatcatgcaaataagcccaaacaagttctgctcatattttacaaagttcaaccttctgatgtgtgggaccagaaaaattcgtatgcaaaagccatggctgaccatgaaaacagattcgcaaaacaacccgagaaggtgaaaaattggagaaaagctttgtctcaactgcgccacctcaccagagaatattgcaaggatgacgggtacgaagctgaacttatcaagaagattgtgaaagacacctctgctaaattacctccaatccctttaccaattaaacatgtagttggactcgattctcggtttctagatgtgaaatcaatgatacatatcgagtctcatgataccgtcctcatcttagaaatttatggagctggtggaattggcaaaactacatttgccttggatatatatagcaatattcgacatgaatttgaagctgcaagttttctcgctaatgtcagagaaaaatcaaacaaaagcactgaaggcctggaagatctccaaaagacacttctatctgagatgggtgaggaaacagaaattataggggccagtgaaatcaaacgcagacttggtcataaaaaggttcttttggttttggatgatgttgattcgacaaaacaattggagtccctagttggaggaggtgattggtttggttccagaagtaggatcattataacaacaagggatacaacattgctagatgagcatgtcattgatgatgttgtcattgaaacatatgaaatgaaggcgcttaattatggtgactctcttgagctcttttgttggcatgcttttaatatgagcaaacctgcagaaaactttgaaggtgtttctaatgatgcagtgcgttatgcaaaaggccatccgttagctttaaaagtaataggctccaatctaaagggtgggagcctaaaggattgggaaatggaattggaaaaatataaaatgattccaaatgccaagattcaagaagtacttgaaataagctaccacagcttagatgtcttggaccagaaaattttcttggacattgcttgtttcttcaagggagagagaaggggatatgttgaaaggatactaaaggcttgtgatttctgcccaagtattggagtatttactgcgaaatgtctcataactattgatgaagatggctgcttggatatgcatgatctaatacaagacatgggtagagagattgtcagaaaggagtcatcgataaatgctggtgaccgtagcagactttggtctcatgaggaagttcttcgagtacttatagaaaattcgggaagcaatagaattgaaggaataatgcttgatccccctagtcatgaaaaagtagatgataggatagatactgcctttgagaagatggagaacctaagaattctgatcattcggaatacaacattttcaacggcacctagttatctaccaaacactttgcgattacttgagtggaaagggtacccatccaagtcttttccaccagatttttatcccaccaaaattgttgatttcaagttaaatcatagttctctaatgttggaaaagtcatttaagaaatatgagggattgacattcatcaacctgtcccagtgtcaatccataactcgaattcctgatgtgtctggagctataaatttaaaagttttgacactcgataaatgccgtaaactgaaaggatttgataaatccattggctttatgcgtaaccttgtgtatgtaagtgctctaaggtgcaacatgctcaaaagtttcgtgccaagcatgagtttaccatctcttgaggtgctttcatttagcttttgcagcagacttgaacacttcccagacgtaatggaagagatggaTAGGCCGTTAAAGATTCAATTGGTAAATACTGCAATTAAGGAATTTCCAATGTCTATCGGCAAACTTACAGGGCTTGAGTACTTAGACATTTCAGGTTGCAAAAAACTTAATATATCAAGAAAGTTGTTCTTGTTGCCAAAACTTGAGACCTTATTAGTTGATGGATGTTCACATATTGGACAATCATTTAAAAGGTTCAAAGAAAGGCATTCAATGGCAAATGGTTGCCCAAATTTGAGGACACTGCATCTAAGCGAGACAAATTTATCAAATGAAGAATTGTATGCAATTCTGAAAGGTTTTCCAAGACTGGAAGCCTTGAAGGTTTCGTATaatgatttccactctctcccagaatgcatcaaagattctaagcaattaaaaagtcttgatgtgagttattgcaagaatctcagcagcattccagaactccctccaagtatccaaaaagtaaatgccagatattgtgggcgcttaacttcagAGGCATCAAATTCGCTATGGTCTAAGGTAAATGAAGAGAAGGAAAGGATACAATTTGTGATGGCAGAAACAGACATTCCAGATTGGTTTGAGTTTGATTGTGTTGGTGGATCAGATAGTCCTACTCCGCTTATGTTGGCACGCAATAAGTTCCCTATTATTGCTGTAGCATTTGCATTGGGCAAGGCCAAATCTGGCTACTCTGAAACGGAGTTATCCCGCACCCTTGGTCTCCACGTGTTCGTAGGCGACGGCTACCCTAAAAGGGAGTTATCTTACACTGCTGCTGTCCACTTGTACATAGGCGGCAAAGAAATATGCCGCAAAGAGTACCATTATTGTTGTGTTGGGGAGGAGCACGTGCTATTGTGTGATCTAATGGTTTTGTTCAGTGACCAAGAGTGGGAGGGTCTTGATGCACATTTCACTGGAGATGATGAATGGAGGGTAATTCAGGTTCAATGTGAATCAGACTTGCCATTGAGTCAATGGGGAGTATTTGTGTACAAGCAGAAAACAAACACTGATGATATCCTATTTACGAATACCCGTCACAACTGCTTATTGACTAATTTGGTTCAGAAAGAAACTCCATGGAAGTCTGAGCAGAGAAGAAGACACTTCTTCAATAATTTTAACCTGAGAGAAATTTATGGCGACCGTTTGACTCTTTATGGTGAGTCATTAGACCAATGCCAGCTGTTTTCTTCAAACATGGTTTTTAGGCACATTCTGGCCGACATTATCAAAGGGAAACTAGTTTCAGCCTGCGATTATGGGGCAAGTTTAATGCAAGCTCACGATGAATCTAGCGGCGATGTGAAGCACACTATGAAGATTTACAAGGAGCGTCTTGATGACACACAAGCTACATATGGACTTATGGAACTTGGACTCGAGGCACGCGAAGAATTGTCATGGGCAGAAGGGGAGGATCGGTTAGTCGTGGAATTCGCTATTATCCTAGAGGAGGAAGATGGAAATCGTCGCTATTGGGGAACATTGAAGTTGAAAGCTGGAGAAGCAGGGTTCGATGAAATGGAGAGGAAGGAATTGCAATTCCTTTGTTTGCGCCGAGCATTCATGTCATACACAAGTGCCCAAAAGGAGTCAATGCTTGTTGTTCTGTTGAAAAGAGAGGAAGCTTCAACCTCTGGCCAGGGGGAGGAGGAGGGAGAATGGCAAGAGTATGACCCTATATTGGAAGAATTGATGTCTGAAATAGCGGAAGATGCTACGAGGTTGAGTAAATCTTATGGGAAATTGAAGGCGTCTATTGTTCCGGTTACGTCAGATAACTTGGTTTCTGACAAATATTCCTTGGAAGGAATATTCTTGAATGCAATAGTAAAACTGGAAGATGGAAAATGGGGACCAACAAAAATACAATTGGGATACGCGGTGATTAGAATGTTAATTTGCGGACAGTGCCCACCGGGATTGTTTGGAACTAAGGTTAAGAAGATGTCCTACGGGATCTTAAGGGAGGAGCTTCATGATGATTGGCGCTGGAATTTATTGGGCTGCTTAATTAACCTTATTCCATCATTTAACTATTTTATTTTGAAATTCATAGTACCTCTCTCGTTGGATTATTTTGTAGCTCTAATTCATGTCAAATCAGTCCATTGGTTACAAAATCATTTAGGATTAACAATTGGTTTCTTGGTTTATACTATAACTCTTAATTTGGTTACTTGGTTTCTAGGAACTCGATTTCTCTGGAGATGTAATGACAGATCTAGCCGCTCAAACATCACCTTCTTGATCCCCATCGTGGCCATGTCTTACCCACCTCTTCGCCAATCTCAGATCTTTTAA 4452 0.2028 MANLNHGATFRDDFFYDVFLSFRGGTRYGFTNRLYNALRQKGIYTFRDTEELRIGADIRPALLKAIENSRMSMVVLCEDYASSTWCLDELAKIIQCYHANKPKQVLLIFYKVQPSDVWDQKNSYAKAMADHENRFAKQPEKVKNWRKALSQLRHLTREYCKDDGYEAELIKKIVKDTSAKLPPIPLPIKHVVGLDSRFLDVKSMIHIESHDTVLILEIYGAGGIGKTTFALDIYSNIRHEFEAASFLANVREKSNKSTEGLEDLQKTLLSEMGEETEIIGASEIKRRLGHKKVLLVLDDVDSTKQLESLVGGGDWFGSRSRIIITTRDTTLLDEHVIDDVVIETYEMKALNYGDSLELFCWHAFNMSKPAENFEGVSNDAVRYAKGHPLALKVIGSNLKGGSLKDWEMELEKYKMIPNAKIQEVLEISYHSLDVLDQKIFLDIACFFKGERRGYVERILKACDFCPSIGVFTAKCLITIDEDGCLDMHDLIQDMGREIVRKESSINAGDRSRLWSHEEVLRVLIENSGSNRIEGIMLDPPSHEKVDDRIDTAFEKMENLRILIIRNTTFSTAPSYLPNTLRLLEWKGYPSKSFPPDFYPTKIVDFKLNHSSLMLEKSFKKYEGLTFINLSQCQSITRIPDVSGAINLKVLTLDKCRKLKGFDKSIGFMRNLVYVSALRCNMLKSFVPSMSLPSLEVLSFSFCSRLEHFPDVMEEMDRPLKIQLVNTAIKEFPMSIGKLTGLEYLDISGCKKLNISRKLFLLPKLETLLVDGCSHIGQSFKRFKERHSMANGCPNLRTLHLSETNLSNEELYAILKGFPRLEALKVSYNDFHSLPECIKDSKQLKSLDVSYCKNLSSIPELPPSIQKVNARYCGRLTSEASNSLWSKVNEEKERIQFVMAETDIPDWFEFDCVGGSDSPTPLMLARNKFPIIAVAFALGKAKSGYSETELSRTLGLHVFVGDGYPKRELSYTAAVHLYIGGKEICRKEYHYCCVGEEHVLLCDLMVLFSDQEWEGLDAHFTGDDEWRVIQVQCESDLPLSQWGVFVYKQKTNTDDILFTNTRHNCLLTNLVQKETPWKSEQRRRHFFNNFNLREIYGDRLTLYGESLDQCQLFSSNMVFRHILADIIKGKLVSACDYGASLMQAHDESSGDVKHTMKIYKERLDDTQATYGLMELGLEAREELSWAEGEDRLVVEFAIILEEEDGNRRYWGTLKLKAGEAGFDEMERKELQFLCLRRAFMSYTSAQKESMLVVLLKREEASTSGQGEEEGEWQEYDPILEELMSEIAEDATRLSKSYGKLKASIVPVTSDNLVSDKYSLEGIFLNAIVKLEDGKWGPTKIQLGYAVIRMLICGQCPPGLFGTKVKKMSYGILREELHDDWRWNLLGCLINLIPSFNYFILKFIVPLSLDYFVALIHVKSVHWLQNHLGLTIGFLVYTITLNLVTWFLGTRFLWRCNDRSSRSNITFLIPIVAMSYPPLRQSQIF 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02239 1483 SUPERFAMILY L domain-like 487 879 - -
Gma12g02239 1483 Gene3D - 12 180 IPR035897 -
Gma12g02239 1483 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 1127 IPR044974 GO:0006952
Gma12g02239 1483 Pfam NB-ARC domain 213 408 IPR002182 GO:0043531
Gma12g02239 1483 ProSiteProfiles TIR domain profile. 14 181 IPR000157 GO:0007165
Gma12g02239 1483 Gene3D - 349 433 IPR042197 -
Gma12g02239 1483 Pfam TIR domain 16 181 IPR000157 GO:0007165
Gma12g02239 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 443 IPR027417 -
Gma12g02239 1483 PRINTS Disease resistance protein signature 384 398 - -
Gma12g02239 1483 PRINTS Disease resistance protein signature 215 230 - -
Gma12g02239 1483 PRINTS Disease resistance protein signature 736 752 - -
Gma12g02239 1483 PRINTS Disease resistance protein signature 287 301 - -
Gma12g02239 1483 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 1127 - -
Gma12g02239 1483 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 154 IPR035897 -
Gma12g02239 1483 Gene3D - 181 342 IPR027417 -
Gma12g02239 1483 Gene3D Ribonuclease Inhibitor 541 718 IPR032675 -
Gma12g02239 1483 Gene3D Ribonuclease Inhibitor 719 886 IPR032675 -
Gma12g02239 1483 SMART till_3 15 155 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02239 Gma-Chr12 43402717 43409077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02239 16 805 WRKY Transcription Factor Family AT4G12020 31.068 5.40e-80 290