Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02215 ATGAAATCGCTAACTGTTAATACTGAAGATTCTTTTTCCAGTTTGCTGGAACTTGCTTCTAACAATGATATTGAAGGCTTCAAGGTGCTTTTAGAGAAAGATTCTTCTTCGATCAATGAGGTTGGGCTCTGGTATGGCCGGCAAAACGGATCGAAGCAATTTGTTCTTGAGCACAGAACCCCTTTGATGGTTGCTGCAACTTATGGTAGCATTGATGTTATGAAGATTATACTGTTGTGCCCCGAGGCAGATGTAAATTTCGCGTGTGGGGCGAACAAAACCACTGCTCTTCACTGTGCTGCTTCTGGTGGGTCTGCCAATGCTGTTGATGCTGTGAAGATTCTTTTATCGGCTGGGGCCGATGTGAATGGCGTGGATGCAAATGGGAATCGCCCTATTGATGTGATTGCTGTTCCTCCGAAGCTGCAAGGTGCAAAAGCCGTTCTCGAGGAACTTCTCTCGGACAGTGCTTCTGAAGGCTCAATTGGTGAATTCTCTGTCCCAGTGTCTGTTAATACTTCCAGTCTGGGTTCTCCTGGCCATTCCTCGAATGGGATGCCGTATACTCCTTCTTCCTCACCGCCATCTCCTGTGGTGGCAAAGTTTACTGATGCAGCTGTTTGCTCTTTGTCGGAGAAGAAGGAATACCCAATTGATCCATCGCTGCCTGATATAAAGAACAGCATATATGCGACCGATGAGTTTCGGATGTTTTCGTTCAAGGTGAGGCCTTGTTCCCGGGCATACTCTCACGATTGGACTGAGTGTCCTTTTGTTCATCCCGGAGAGAATGCTCGGAGGAGAGACCCCAGGAAGTTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGCGGGGACATGTGTGAATATGCTCATGGGGTGTTTGAGTGCTGGCTGCACCCGGCTCAGTATCGGACACGCCTCTGCAAAGATGGTACCAGTTGCAATCGAAGGGTGTGTTTTTTTGCTCACACTGCGGAGGAGCTTCGTCCGCTGTATGTGTCCACTGGATCTGCTGTCCCTTCGCCCAGGTCATCTGCCTCGGCTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTTTGCCGGGCTCGCCTTCTTCGGTCTCTTCCATGTCGCCATCCCACTTTGGGCAACCAATGTCCCCATCTGCAAATGGCATGTCACTGTCTTCTGCTTGGGCACAGCCAAATGTGTCAGCTCTTCATTTACCAGGAAGCAATCTTCAGTCTAGTCGATTGAGGTCTTCCCTTAGTGCCCGCGACATGCCACCAGACGACTTGAACATGATGTCTGATCTTGATGGCCAGCAGCAGCATCCTTTGAATGACTTGAGCTGTTACTTACAGCCGCGGCCTGGTGCTGGTTCTGTGAGTAGATCTGGTCGGTCCAAGATCCTAACTCCATCAAATCTTGAAGATCTCTTTTCTGCTGAGATTTCTTCATCTCCCCGGTATTCTGATCCAGCAGCGGGTTCCGTGTTTTCCCCTACGCACAAATCAGCTGTTCTCAATCAGTTTCAACAGCTCCAAAGCTTCCTTTGGTGTATCTCCTTCGGGTAG 1581 0.4959 MKSLTVNTEDSFSSLLELASNNDIEGFKVLLEKDSSSINEVGLWYGRQNGSKQFVLEHRTPLMVAATYGSIDVMKIILLCPEADVNFACGANKTTALHCAASGGSANAVDAVKILLSAGADVNGVDANGNRPIDVIAVPPKLQGAKAVLEELLSDSASEGSIGEFSVPVSVNTSSLGSPGHSSNGMPYTPSSSPPSPVVAKFTDAAVCSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSAWAQPNVSALHLPGSNLQSSRLRSSLSARDMPPDDLNMMSDLDGQQQHPLNDLSCYLQPRPGAGSVSRSGRSKILTPSNLEDLFSAEISSSPRYSDPAAGSVFSPTHKSAVLNQFQQLQSFLWCISFG 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02215 526 Gene3D - 275 337 - -
Gma12g02215 526 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Gma12g02215 526 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Gma12g02215 526 SMART ANK_2a 57 87 IPR002110 GO:0005515
Gma12g02215 526 SMART ANK_2a 10 40 IPR002110 GO:0005515
Gma12g02215 526 SMART ANK_2a 92 124 IPR002110 GO:0005515
Gma12g02215 526 Gene3D - 3 159 IPR036770 -
Gma12g02215 526 PANTHER UNKEMPT FAMILY MEMBER 1 521 IPR045234 -
Gma12g02215 526 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Gma12g02215 526 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Gma12g02215 526 Pfam Ankyrin repeats (3 copies) 19 123 IPR002110 GO:0005515
Gma12g02215 526 SUPERFAMILY Ankyrin repeat 6 140 IPR036770 -
Gma12g02215 526 MobiDBLite consensus disorder prediction 371 396 - -
Gma12g02215 526 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Gma12g02215 526 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 521 - -
Gma12g02215 526 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Gma12g02215 526 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Gma12g02215 526 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02215 Gma-Chr12 43164734 43166379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02215 9 514 C2H2 Transcription Factor Family AT5G12850 59.844 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma12g02215 Ank_2 3.6e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02215 - - gmx:100784225 996.882