Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02208 ATGTATATCAAGGAGATTTGCCTGGAAGGGTTCAAGTCCTACGCGACCCGCACCGTGGTTCCGGGCTTTGACCCTTTCTTCAACGCCATCACCGGCTTGAACGGTTCCGGCAAGTCCAACATCCTCGATTCCATCTGCTTCGTCCTCGGCATCACCAACTTGCAGCAGGTCAGGGCTTCCAACCTCCAGGAACTCGTATACAAGCAGGGCCAGGCCGGCATCACCAAGGCCACCGTCTCCGTCGTCTTCGACAACTCCCACAGCTCCAGAAGCCCTCTCGGATACGAAGGACACTCCGAGATCACAGTAACAAGACAGATTGTGGTTGGGGGCAGGAACAAGTATTTGATCAATGGGAAGCTTGCACAGCCTAGTCAAGTTCAGAACCTTTTTCATTCAGTGCAGCTAAATGTTAATAATCCACATTTCCTTATAATGCAAGGGCGCATCACTAAGGTTTTAAATATGAAACCGCAAGAGATATTGTCTATGCTTGAGGAAGCTGCGGGGACGAGAATGTATGAGACAAAGAAAGAGGCTGCTCTTAAAACACTTGAGAAGAAGCAGAGTAAGGTTGATGAGATTAACAAGCTTCTTGACCAGGAGATACTGCCTGCTCTGGAGAAGTTAAGGAAAGAAAAGACACAGTACATGCAATGGGCTAATGGCAATGCAGAGTTAGATAGGTTGAGAAGATTTTGTATTGCTTATGAGTATGTTCAAGCGAAGAGGATTAAAGACAATGCTGCTTCTGAGGTGGAAGAAGTGAAAGCCAGGATAGCCGAGATTGATGACGTTGCTAAGATAAATAAGGTGGAAATAAAGGAAATGGAGACCAAAATAACTCAGTTGACTGCTGAAAAGGAAGCAAACATGGGTGGAGAAATGAAATCTCTGTCCGAGAAGGTAGATGCACTTTCCCAGAATCTTGTGAGGGAGACATCTGTACTAAATAATAAAGAAGACACTTTGAGGAGtgaagaagccaacaaagcaaatCTTGTTAAAAATATTGAAGAATTGAAGCATTCTGTACAAGAGAAGGCCTCTGCTGTTAAAAAGGCTGAAGAGGGGGTGGCAGATCTGAAAAATAAAGTTGATGAGCTCACAAAGAGTCTAGAGGAGCATGAAAAAGAATACCAGGGTGTTTTAGCTGGCAAGAGCAGTGGTAATGAAGAGAAATGCTTAGAGGATCAATTAAGGGATGCAAAGGTAGCAGTTGGGAGTACTGAAACAGAATTGAAACAGCTGAAAGCCAAAATTAGCCATTGTGAAAAGGAACTGAAGGAGAAAACAAGTCAATTAAGGTCAAAATGTGAAGAAGCTAATGCTGTTGAAAATGAGCTCAGCACTAGAAAAAAAGATGTGGGGAATGTTAGAATGGAGTTGGAGTCTCTTTCTTATAAAGAGGGTGAGATGGAAGATTTACAAAAGGAGCGTATGACTGAGATGGACTGTGTGCAAAAGTTGAAGGATGAAATACGCAATCTTTCAGCAAACCTGGCAAATGTTGAATTTACATACTGTGATCCTGTTAAGAATTTTGATAGGTCGAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGGTTACAGCCGCTGGAAAGTTGTATAATGTTGTTGTCGACACAGAAAATACTGGAAAACAACTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTATACCTCTGAACAAGATACAATCCTACAGTGTTTCCTCCAGAGTTCAACAAGCTGCTGTTAGATTGGTGGGCAAGGGAAATGCTGAAGTAGCTCTTTCTTTGGTTGGTTATGAAGAAGAATTGCGGAGTGCAATGGAATATGTATTTGGTTCAACCTTTGTCTGCAAAACCATTGACGCTGCAAAGGAGGTGGCATTTAATCGGGAGATTCACACCACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCAAGTGGTCTTCTGACGGGTGGAAGCCGCAAGGGAGGTGGTGATCTTTTGGGGCAACTTCATGCTTTGTCTGAGGCTGAGTCAAAACTTTCAGTGCATCAAAGAAGGTTGTCAGAGATTGAGGCAAAGATCTCAAAGCTCCTCCCACTTCAGAAAAAATTTATAGATCTCAAAGCACAATTAGAACTGAAGTTGTACGACCTTTCATTGTTTCAGAGCAGAGCTGAGCAAAATGAGCATCATAAGCTCGGAGAATTAGTGAAGAAGATTGAGCAAGAGCTTAATGAAGTAAAATCTACAGTGAAGGACAAGCAACTTTTATATAAGGACTGTGTTAAAACTGTTTCATCTCTTGAGAAATCAATCAAAGATCATGACAATAACAGAGAAAGTAGGCTAAAAGGCTTGGAGAAAAAGATAAAGACAATCAAATCTCAAATGCAGTCATCATTAAAAGATCTGAAGGGACATGATAGTGAAAAGGAGAGACTTGTAATGGAAATGGAAGCTGTTATACAGGAGCAAGCATCTTTGGAGAATCAGTTAGCATCATTGGGAACACTGATCAGTAATCTTGCCTCTGAAGTAGAAGAACAAAGATCCAGTGTTGTTGCTGCACGGGATAATCTTGATCAAGTTCAGTCACAGCTGAAATCAGTTCGCCTAAAAATGAAGGAATGTGATCAGGAAATCAGTGCTATTATTAAAGAGCAGCAAAAGCTTGAACATAAAATTAGTGAGAGTAATCTTGAAAGGAAGAGGATGGAAAATGAGGTAAAACGAATGGAGATGGAACAGAAAGACTGCTCTGTGAGAGTAGATAAATTAATAGAGAAGCATGCATGGATTGCTTCTGAAAAACAGTTGTTTGGTAGAAGTGGAACTGATTATGATTTTTCTTCTCGTGATCCTACTAAAGCTAGGGAAGAACTTGAGAAGCTTCAGGCTGAACAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTGATGGCAATGTTTGAGAAGGCTGAAGATGAGTACAATGATTTGATGTCCAAAAAAAACATAATTGAGAATGACAAGTCTAAAATCAAGATGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATAATGACTTTGGATCCATCTTTTCTATGCTACTACCGGGAACAATGGCCAAGTTAGAACCTCCAGAAGGATGCAGCTTCCTTGATGGTCTTGAGGTTCGTGTTGCATTTGGAAGTGTGTGGAAGCAATCATTGTCTGAATTAAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATAAAGGCTCACTTTCCGCACTCTCAGTTTATTGTGGTTTCCTTGAAGGAAGGCATGTTCAATAATGCAAATGTTCTTTTCCGGACAAAATTTGTGGATGATATTCAAATAGATCCCGTTGCTGCATTCAGTAATCACAACCACCTGGAACGCCATTATTCAATTCAATTGgaaataaatcatggcaatgaagaagttctcaacatcattgcttccacttcaatccatccacaagaaactgtaaatacactgaatccattacaagtggttgaagatgttgttgctggcgaaatgattgtccctgttggtgctccaattaaccatcaaacaaataatgaatcaacaagtttattcgaaggttgggcaccagagcatgctattgtcggaagcaacaattcgaatggtattttccaaaGACTTCAAATGTGCAAAGAGGATAGGGAGGGAATGATGAAAAAGTTGCAATGGGAAAGGAATGTGAGGTGTCAGGAGGTCCTGTAG 3885 0.3861 MYIKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSVVFDNSHSSRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPQEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKEKTQYMQWANGNAELDRLRRFCIAYEYVQAKRIKDNAASEVEEVKARIAEIDDVAKINKVEIKEMETKITQLTAEKEANMGGEMKSLSEKVDALSQNLVRETSVLNNKEDTLRSEEANKANLVKNIEELKHSVQEKASAVKKAEEGVADLKNKVDELTKSLEEHEKEYQGVLAGKSSGNEEKCLEDQLRDAKVAVGSTETELKQLKAKISHCEKELKEKTSQLRSKCEEANAVENELSTRKKDVGNVRMELESLSYKEGEMEDLQKERMTEMDCVQKLKDEIRNLSANLANVEFTYCDPVKNFDRSKVKGVVAKLIKVKDRSTMTALEVTAAGKLYNVVVDTENTGKQLLQNGNLRRRVTIIPLNKIQSYSVSSRVQQAAVRLVGKGNAEVALSLVGYEEELRSAMEYVFGSTFVCKTIDAAKEVAFNREIHTTSVTLEGDIFQPSGLLTGGSRKGGGDLLGQLHALSEAESKLSVHQRRLSEIEAKISKLLPLQKKFIDLKAQLELKLYDLSLFQSRAEQNEHHKLGELVKKIEQELNEVKSTVKDKQLLYKDCVKTVSSLEKSIKDHDNNRESRLKGLEKKIKTIKSQMQSSLKDLKGHDSEKERLVMEMEAVIQEQASLENQLASLGTLISNLASEVEEQRSSVVAARDNLDQVQSQLKSVRLKMKECDQEISAIIKEQQKLEHKISESNLERKRMENEVKRMEMEQKDCSVRVDKLIEKHAWIASEKQLFGRSGTDYDFSSRDPTKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKMVIEELDEKKKETLNVTWIKVNNDFGSIFSMLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDDIQIDPVAAFSNHNHLERHYSIQLEINHGNEEVLNIIASTSIHPQETVNTLNPLQVVEDVVAGEMIVPVGAPINHQTNNESTSLFEGWAPEHAIVGSNNSNGIFQRLQMCKEDREGMMKKLQWERNVRCQEVL 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02208 1294 Coils Coil 817 837 - -
Gma12g02208 1294 Gene3D - 995 1169 IPR027417 -
Gma12g02208 1294 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 1163 - -
Gma12g02208 1294 Coils Coil 178 198 - -
Gma12g02208 1294 Coils Coil 400 448 - -
Gma12g02208 1294 Coils Coil 982 1026 - -
Gma12g02208 1294 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 1163 - -
Gma12g02208 1294 Gene3D - 1 202 IPR027417 -
Gma12g02208 1294 SUPERFAMILY Smc hinge domain 484 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gma12g02208 1294 Coils Coil 743 763 - -
Gma12g02208 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1157 IPR027417 -
Gma12g02208 1294 Coils Coil 317 379 - -
Gma12g02208 1294 Coils Coil 679 699 - -
Gma12g02208 1294 Pfam RecF/RecN/SMC N terminal domain 841 1161 IPR003395 -
Gma12g02208 1294 Coils Coil 852 928 - -
Gma12g02208 1294 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gma12g02208 1294 Coils Coil 789 809 - -
Gma12g02208 1294 Gene3D - 577 667 - -
Gma12g02208 1294 Coils Coil 239 287 - -
Gma12g02208 1294 Gene3D - 518 677 - -
Gma12g02208 1294 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Gma12g02208 1294 PIRSF SMC 1 1155 IPR024704 GO:0005524|GO:0016887
Gma12g02208 1294 Coils Coil 473 507 - -
Gma12g02208 1294 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gma12g02208 1294 Pfam RecF/RecN/SMC N terminal domain 2 428 IPR003395 -
Gma12g02208 1294 Coils Coil 1291 1294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02208 Gma-Chr12 43074050 43095058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02208 3 170 Structural Maintenance of Chromosomes family AT5G15920 23.214 4.47e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02208 K06674 - gmx:100780995 2194.85