Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma12g02206 | atgggaaagaagaacaaagtgaaggaaaatggaggcaaagagcattgctcctcgacactttttgtctccaacttgccctattccttttccaattctcagTTGGAGGAGACGTTCAGTGAGGTTGGACCTGTCAGGCGTTGTTTCATAGTCACTCAGAAAGGGTCAGCCCAACATCGTGGTTTTGGTTACGTCCAATTTGCCGTCGAGGAAGATGCTAACCGTGCTATTGAGCTGAAGAATGGTACATCTGTTGAAGGCCGGAAAATTGTAGTGAAGCATGCAATGCCTCGTCCTCCCTGTGAAGAACGGCAATCAAAACCAAATAAAGAGGGCAAGACAGATGATCTCACAAAGCCAAAAGACGATGATGAAGACAGCACATTATCTGGAGCAGAGAAGAACGTTTCAGTTTTGAAGGAAGAAGAAGTACAAGTCAGTAAACAAAAAAACATGAGGAAGCCCACAGAAACGAAAAAATCAGCTCTCTGTGATGATGTACCAGATGAGGGTAGTTGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATAAATTCCGATATGGCTGAAGAAGTTCACGGCAAAGCTAGAGAGATTGGCACTGTGTGTTCAATTAAGTACCCTCTTTCAAGGAAAGATCTCGAGCAACATGGTCTCCTGCAAGATGGATGCACTTTAGATGCTTCAGCTGTGCTTTATACAAGTGTAAAATCAGCCCGAGCTTCTGTTGCAACGTTACATAGAAAAGAGATAGGAGGGGGAAACATTTGGGTGCGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCAAAAGAAAATGAAATAAGAGATATGTTTTCATCTGCAGGATGTGTGTGGGATGTATTTATTCCACAAAAGACAAACACAGATCTGTCTAAGGGTTTTGCATTTGTAAAGTTCACCTGCAAGCAAGATGCGGAAAAAGCCATTCAAAAGCTCAATGGATCAAAGTTTGCAAAACGACTCATAGCTGTTGATTGGGCTGTTTCAAAAAAGATATTTAGCAGTGATACAAATAATGCTCTTGCCTCAGAGAAAGGACAACAAAACATGAGTGATGAGGATAGTACCGATGAAGATTTTGAGCTTGTTGATAAAAGATCTGGTCAAGGAGATAGTGATACAGACTACTCTAGTGCCATGGAGGAAGAAGGCACCCCTCCTGAAGATAATTTTGATAAGGAAGCAGACATTGCAAAAAAGGTTCTTAACAACTTGCTTACATCCTCGAGTAAAGGAACATCTGTAAACAATGATTCTATGTTGATCAAAGAAAACAAGGGATCAAGATCTGATGAAATTGTTAAGGATGCAGATGAAAAAGCATCTAATGAGTCTGAAAAGGTTTCAGGTGTTTCTAAGCCTGAAATTTCCAGCAGAAACAACTTATTAAATCCTAAGGGAACAGAAGATGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTGAAACAACGATTTTCTGGATTTGGGGAAATAGAATATTTTGTTCCTGTTCTCCACCAAGTTACCAAGCGACCCAGAGGGACTGGTTTTCTAAAATTTAAAACTGTAGAAGCAGCTAATACTGTAATTTCAACTGCCAGGGCTGCTTCTGGGATGGGTATTTTATTGAAGGGTAGACCATTAAAAGTTTTGAAGGCTTTGGATAAGAAATCAGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGAACTACAGCTGCTGAAGGGGTTTCAGCCAGCGATATGTTAAAACGCCTAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCCAATTTTCATGTTTCGAGAACTAGACTCATTATCTACAACTTACCTAAGTCAATGAATGAGAAAGAACTCAAGAAATTTTGCATTGATGCAGTTGTCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGAAAAGAAAGGAAATGTTGCTCAGGAGCGCTATTCACGGGGAGTTGCCTTTGTTGAATTTTCGGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCCGAACATCGGCCGATTGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTACAATCTCAGCATCAGACTCCTCAAGTTGACAACAATGCCATGGATAATGACAACCCTGGCACGGTAGAAGGTTGCAAGCCTGTAAAGGACAGAAAACGAAAATCTCGAGAGCATGACGAACCAGCAAAGGAATCAGTACTGAATACAAATGGTGAATCGGGTGTTGCAGTGGCAAATGGAAAATCCCCACAAGGACACAAATCCAAAAGACAAAAGGGCAACAATAAGAGTAAAAAGGCACTGAAAGAAAATCGAGAAGCAGCCTTGTCCATGAAGCCAAAGAATAACGAAAATGGCCATAACAATGGTGGTGCATCACTTGAAGGTCAAAACACTGCCACTGACTCTAATAGAAGAAAATCAGGGAATAAAGATGATGTGGGGTTTAGAAAAAGAAAGATGCAAAACCAAGAGCAAGAAGCTGGCCAAAAGGTTTTAAAGAAACGGCTTAAGAAGAATAAAGGTTCAGTAGGGAAGGACGTAGTAGACAAGCTTGACATGCTTGTAGAACAATATAAATCCAAGTTCTCACACAAGGGTTCCCTAGAGAATGATGGAGAGAAAAGACATTCAAAACAGCTTAGGAAATGGTTCCAATCATAG | 2877 | 0.3924 | MGKKNKVKENGGKEHCSSTLFVSNLPYSFSNSQLEETFSEVGPVRRCFIVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGTSVEGRKIVVKHAMPRPPCEERQSKPNKEGKTDDLTKPKDDDEDSTLSGAEKNVSVLKEEEVQVSKQKNMRKPTETKKSALCDDVPDEGSCSEKQRVARTVIFGGLINSDMAEEVHGKAREIGTVCSIKYPLSRKDLEQHGLLQDGCTLDASAVLYTSVKSARASVATLHRKEIGGGNIWVRQLGGEGSKTQKWKLIVRNLPFKAKENEIRDMFSSAGCVWDVFIPQKTNTDLSKGFAFVKFTCKQDAEKAIQKLNGSKFAKRLIAVDWAVSKKIFSSDTNNALASEKGQQNMSDEDSTDEDFELVDKRSGQGDSDTDYSSAMEEEGTPPEDNFDKEADIAKKVLNNLLTSSSKGTSVNNDSMLIKENKGSRSDEIVKDADEKASNESEKVSGVSKPEISSRNNLLNPKGTEDDLQRTVFISNLPFECDNEEVKQRFSGFGEIEYFVPVLHQVTKRPRGTGFLKFKTVEAANTVISTARAASGMGILLKGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLAKEGLILEGTTAAEGVSASDMLKRLELERKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKELKKFCIDAVVSRATKQKPVIRQIKFLKNEKKGNVAQERYSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQHQTPQVDNNAMDNDNPGTVEGCKPVKDRKRKSREHDEPAKESVLNTNGESGVAVANGKSPQGHKSKRQKGNNKSKKALKENREAALSMKPKNNENGHNNGGASLEGQNTATDSNRRKSGNKDDVGFRKRKMQNQEQEAGQKVLKKRLKKNKGSVGKDVVDKLDMLVEQYKSKFSHKGSLENDGEKRHSKQLRKWFQS | 958 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 876 | 904 | - | - | |
| Gma12g02206 | 958 | SUPERFAMILY | RNA-binding domain, RBD | 272 | 356 | IPR035979 | GO:0003676 | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 448 | 470 | - | - | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 935 | 952 | - | - | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 756 | 918 | - | - | |
| Gma12g02206 | 958 | CDD | RRM2_RBM28_like | 276 | 352 | - | - | |
| Gma12g02206 | 958 | Coils | Coil | 576 | 603 | - | - | |
| Gma12g02206 | 958 | PANTHER | RNA BINDING PROTEIN | 495 | 769 | - | - | |
| Gma12g02206 | 958 | PANTHER | RNA BINDING PROTEIN | 8 | 424 | - | - | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 471 | 491 | - | - | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 87 | 170 | - | - | |
| Gma12g02206 | 958 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 498 | 581 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 935 | 958 | - | - | |
| Gma12g02206 | 958 | SUPERFAMILY | RNA-binding domain, RBD | 498 | 728 | IPR035979 | GO:0003676 | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 852 | 875 | - | - | |
| Gma12g02206 | 958 | SMART | rrm1_1 | 499 | 577 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | SMART | rrm1_1 | 276 | 349 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | SMART | rrm1_1 | 19 | 92 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | SMART | rrm1_1 | 651 | 742 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 96 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | CDD | RRM4_RBM28_like | 650 | 747 | - | - | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 365 | 415 | - | - | |
| Gma12g02206 | 958 | Coils | Coil | 741 | 761 | - | - | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 432 | 447 | - | - | |
| Gma12g02206 | 958 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 263 | IPR035979 | GO:0003676 | |
| Gma12g02206 | 958 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 89 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 277 | 346 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 500 | 557 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 275 | 353 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 432 | 491 | - | - | |
| Gma12g02206 | 958 | SMART | rrm2_1 | 19 | 92 | IPR003954 | GO:0003676 | |
| Gma12g02206 | 958 | SMART | rrm2_1 | 276 | 349 | IPR003954 | GO:0003676 | |
| Gma12g02206 | 958 | Gene3D | - | 649 | 744 | IPR012677 | - | |
| Gma12g02206 | 958 | PANTHER | RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED | 8 | 424 | - | - | |
| Gma12g02206 | 958 | PANTHER | RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED | 495 | 769 | - | - | |
| Gma12g02206 | 958 | Gene3D | - | 263 | 401 | IPR012677 | - | |
| Gma12g02206 | 958 | Gene3D | - | 2 | 128 | IPR012677 | - | |
| Gma12g02206 | 958 | Gene3D | - | 432 | 595 | IPR012677 | - | |
| Gma12g02206 | 958 | CDD | RRM3_RBM28_like | 498 | 579 | - | - | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 782 | 803 | - | - | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 90 | 170 | - | - | |
| Gma12g02206 | 958 | CDD | RRM1_RBM28_like | 19 | 97 | - | - | |
| Gma12g02206 | 958 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 650 | 758 | IPR000504 | GO:0003723 | |
| Gma12g02206 | 958 | MobiDBLite | consensus disorder prediction | 756 | 776 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma12g02206 | Gma-Chr12 | 43055193 | 43063614 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma12g02206 | 22 | 98 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 36.364 | 5.27e-08 | 53.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma12g02206 | K14573 | - | gmx:100791823 | 1871.29 |