Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02187 ATGGTTGGATTCCAGAGTGACCATATGCCTGGGAACAAGTGCAATGGTAATTCTAATAGTTTTCCGGTTCCGGATCGTCATGAACGACTTATGAGAGGAAGAGAGCTAAGAAAAAGCAGCAGGGCATCTCCTGATAGTAATAGTATTAGTAATGTGGGTAGTGAAATTTTTGAGCATGACCTGCGCTTAAGAGAAGATAATAACTCTGCTGCTCCCATTGTTGAACGATACCTGGAAGAAGTGGCAGCAGCTGCAGCAGCAGCGCGGGGAGAAAGGAAAGATGGGAGACCTTTCAGACAACGGCTTTTGGTGGTGGCCAACAGGCTGCCAGTCTCAGCAATTAGGAAAGGCGAGGATTCGTGGTCTTTGGAGATAAGTGCTGGTGGCCTGGTCAGCGCTCTCTTAGGTGTGAAGGAGTTTGAGGCGAGATGGATAGGTTGGGCTGGTGTCAATGTGCCCGATGAGATTGGACAAAAGGCACTTACAAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTGCATCAATATTACAATGGCTATTGCAATAACATTCTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGGAGTTTCCAATCTCAGTTTGAAGCTTATCAGAAAGCAAATCAAATGTTTGCTGATGTTGTAAATAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCACAAAATGAAAGTTGGCTGGTTTCTGCATACCCCATTTCCATCTTCTGAAATTCACAGGACATTGCCATCTCGCTCAGAACTCTTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACATACGATTATGCACGGCATTTTGTCAGTGCATGTACACGCATTCTTGGACTTGAGGGCACACCTGAAGGGGTTGAGAATCAGGGGAAGCTGACTCGAGTTGCAGCATTTCCAATAGGTATAGACTCAGAACGATTCATACGTGCACTTGACCTTCCTCAAGTCAAGGATCACATCAAAAAATTACAAGAGAGATTTAATGGAAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAAAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAAATCCTGGTTGGCATGATAAAGTTGTTCTGCTTCAAATTGCCGTGCCGACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACTAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTGACTGCTGTTCCCATACATCACCTGGATCGCTCTCTTGATTTTCATGCACTGTGTGCTTTGTATGCTATTACCGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCCTGTCAAGATAAAAAGAAAGGGGTTCTCATTCTCAGTGAATTTGCTGGTGCTGCACAGTCACTTGGTGCTGGGGCTATTCTTGTTAACCCTTGGAACATCACAGAAGTTGCTACTGCAATTTCCAAGGCTCTGAATATGCCATCGGCAGAACGCGAGAAGAGACATAAGCATAACTATGAACATGTAAAAACTCACACTGCTCAGGAATGGGCAGAAACTTTTGTAAGTGAACTAAATGATACTGTTGTCGAGGCACAGATAAGGACAAATCAAGTTCCACCACGGCTCCCAACAGAGACTGCAGTTGAATGTTATTTGCAGTCAAATAATCGGTTGCTTATTTTGGGTTTCAATGGAACCTTAACTGAGCCAATTGAGAGAGAAGGTGATCGGTTTAAAGAAAGGGAACTCACAGTGCATCCAGAACTGAAACAGCCCTTGGCCGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTTGTAGAACAGTTCTAGATGAAAACTTTAAAGAATATGACATCTGGCTGGCAGCAGAGAATGGGATGTTTCTAAACCCTTCAAAGGGAGAATGGATGACAACAATGCCTGAGCAACTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGATTACTTCACGGACAGAACACCTCGATCGTATTTTGAAGAAAGGGAAGCTTCACTTGTTTGGAGTTACAGACATGCAGATGTTGAGTTCGGAAGACTGCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCTGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGCTAATGTTACAAAGGGAGCAGCTATTGACCGCATTCTAGGTGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTACGTTCTGTGTATAGGACATTTTCTGACAAAGGATGAAGATATATACGCGTTTTTTGAGCCAGAGCTACCACGAAGCAAGGTAACAGAAGGAGTCAAGTTTCCTGTTGAGAGGGTATCGTCATCCCAAAATAAGGGACAACGGCCTGTGTCAAACTCTGAGAAGAAAACAAATAATCATGTCTGCCGCCTGCCACGGCGGCCGGCTCCTGAAAAGATCTCTTGGAATGTGCTTGACCTCAAGAAGGAGAATTACTTCTCGTGCGCTGTTGGACGAACACAGACCAATGCTCGGTATACGCTTGCTTCACCAGATGAAGTTGTTGCATTTCTCAAGGAACTCCATACTTTGTCTCAGAGCTAA 2745 0.4368 MVGFQSDHMPGNKCNGNSNSFPVPDRHERLMRGRELRKSSRASPDSNSISNVGSEIFEHDLRLREDNNSAAPIVERYLEEVAAAAAAARGERKDGRPFRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNHKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFIRALDLPQVKDHIKKLQERFNGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPGWHDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAITDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVATAISKALNMPSAEREKRHKHNYEHVKTHTAQEWAETFVSELNDTVVEAQIRTNQVPPRLPTETAVECYLQSNNRLLILGFNGTLTEPIEREGDRFKERELTVHPELKQPLAELCSDPKTTVVVLSGSCRTVLDENFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFDYFTDRTPRSYFEEREASLVWSYRHADVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKDEDIYAFFEPELPRSKVTEGVKFPVERVSSSQNKGQRPVSNSEKKTNNHVCRLPRRPAPEKISWNVLDLKKENYFSCAVGRTQTNARYTLASPDEVVAFLKELHTLSQS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02187 914 Gene3D - 601 812 IPR023214 -
Gma12g02187 914 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 26 908 - -
Gma12g02187 914 MobiDBLite consensus disorder prediction 831 856 - -
Gma12g02187 914 Gene3D Glycogen Phosphorylase B; 348 551 - -
Gma12g02187 914 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 569 - -
Gma12g02187 914 Gene3D Glycogen Phosphorylase B; 93 347 - -
Gma12g02187 914 MobiDBLite consensus disorder prediction 32 51 - -
Gma12g02187 914 Pfam Trehalose-phosphatase 621 840 IPR003337 GO:0003824|GO:0005992
Gma12g02187 914 MobiDBLite consensus disorder prediction 831 852 - -
Gma12g02187 914 CDD HAD_TPP 599 825 - -
Gma12g02187 914 Gene3D - 688 768 - -
Gma12g02187 914 Pfam Glycosyltransferase family 20 101 566 IPR001830 GO:0003824|GO:0005992
Gma12g02187 914 MobiDBLite consensus disorder prediction 1 26 - -
Gma12g02187 914 CDD GT20_TPS 101 566 IPR001830 GO:0003824|GO:0005992
Gma12g02187 914 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 26 908 IPR001830 GO:0003824|GO:0005992
Gma12g02187 914 TIGRFAM T6PP: trehalose-phosphatase 597 908 IPR003337 GO:0003824|GO:0005992
Gma12g02187 914 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 101 566 IPR012766 GO:0003825|GO:0005992
Gma12g02187 914 SUPERFAMILY HAD-like 598 909 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02187 Gma-Chr12 42910383 42921666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02187 9 914 Trehalose Biosynthesis Gene Families AT1G78580 75.318 0.0 1441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02187 K16055 - gmx:100820010 1842.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02187 12 42910383 42921666 Gma13g02350 13 38228466 38239897 ECH
Gma12g02187 12 42910383 42921666 Gma12g02187 12 42910383 42921666 ECH