Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02186 ATGATGCTAAAGAGACTGTTACTGCTACTAAAACCCATAACTGTATTTTCACCACCTTCCCACACCAACCCTCAGATCTTACAGTTCTTGGAGAATAGGAGAAAGGTGCACCATGATGCAATAAACTTTTGTCAAGCCATTCTGCAAAAAAAGTCAATTGAATGGAAAGCTGTGCACCGTAACAATTTGTCACAGCCCATCAATGATGTTGACCTAGTTATTACACTTGGTGGCGATGGAACTCTTCTGCAGGCCAGCCATTTAATGGATGACAAAATTCCTGTTCTTGGAGTGAATTCTGACCCTACACAAATTGATGAGGTGGAAGAGTTCGGCAGTGAATTTGATGCTCGCAGAAGCACGGGCCATCTTTGTGCTGCTATTGTTGAAAACTTTGAACAAGTTTTAGATGGTATACTTGAAGGTCAAATTGTTCCTTCCGAACTAACAAGGATTGTGATGTCTGTTAATGCACTACACTTGCCAACTTTTGCTCTCAATGATATCTTAATTTCACATCCATGTCCTGCTTCACTTTCTAGGTTCTCCTTCAGAATCAAAGAGGGTGACCAGCCATGTTCTCCTCTAGTTAACTGCAGATCAAGTGGTCTAAGAGTTTCAACAGCTACTGGTTCAACTGCTGCAATGCAATCGGCAGGTGGATTTCCAATGCCCATTTTATCCCAGGATCTCCAATACATGACTTTAAAATTGAGGAGCATAAAGATTCCCATGTTTGCGAGGAGAGCTTCAGGAGAAGGCAACGATTACGTAGCATTACTGAATCCAGCACAGGCGGTCTCCTCTGCCACGACACTACCCGTTTGCTGCCACGTGTACATGAACCTCGTGGCCGCAAAAAATATCCTTCATTTTTTTCTTCTTTCTCTTCTCCGCCACTTCTTAAACCCTGCTCCTCTGCTTCGTGGTGCCCCAAACCTCTTCTTCTCTTTCTTTTCCCTCTCTCAATTCCAAACAGTAGATTTAGACACCCTTTTGGAAAAGGAAGTGTTTTTTGAGGGAAAGGAGGGAATTTTTTGTGTGGGAGGGTGGAACCCGGAATTCGGTTTGGTTGGGGTAGAGAGGATGAAGATTCAGTGTAACGTGTGTGAGGCTGCGGAGGCCAAGGTTCTTTGTTGTGCTGATGAGGCTGGGCTGTGTTGGGAGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTGCCTCTTTCTACCTCTTCCTCTCATATGCCTAAATGTGACATTTGTCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAAGATCGGGCTCTGCTCTGCAGAAAATGTGATGTGGCAATACACACTGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTAACTGGTGTAAGAGTAGGCCTTGAAGCTACAGACCCTGGTGCTTCCTCAACTTCTTTGAAGTCAGATTCTGGGGAGAAAGTTTCAGATTCTTCTGTCTCTAGAAAGGTTTCCACAGCGCCCCAGCCATCAAATTATAATGAAGTGTTACCCGCTGAAGTTGGAGGAGTTGGGGAGTTTCCATCAGCCAAGGTGTCCTTTGGTGGTGGTTCCACAGCTGGAAATATCTCACAGTGGACTATTGATGAATTTATTGGCTTAAACGAGTTCAGTCAGAATTATGATTACATGGAAGGATCATCAAGGGCTGACGGTGGTAAGCTTGGGGATTCTGATTCTCCTGTTTTAAGATCTGGTGAAGAGGAAATGGAGGAGGAGGATGACTATTTGGAACGCGTTCCAGATTCGTCGTGGACAGTCCCGCAGATCCCTTCCCCACCTACTTCTTCTGGGTTATGCTGGCCAAAAGACCATACTAATCTGTATGGTTCATCTGATAGTGTTCTGTTTGTTCCTGACATAAGCTTCTCTCACCTGCAACAATCTCAGATTAGTATTTTTTTGAGACGCCGGAGGCAGCTTTAA 1965 0.4458 MMLKRLLLLLKPITVFSPPSHTNPQILQFLENRRKVHHDAINFCQAILQKKSIEWKAVHRNNLSQPINDVDLVITLGGDGTLLQASHLMDDKIPVLGVNSDPTQIDEVEEFGSEFDARRSTGHLCAAIVENFEQVLDGILEGQIVPSELTRIVMSVNALHLPTFALNDILISHPCPASLSRFSFRIKEGDQPCSPLVNCRSSGLRVSTATGSTAAMQSAGGFPMPILSQDLQYMTLKLRSIKIPMFARRASGEGNDYVALLNPAQAVSSATTLPVCCHVYMNLVAAKNILHFFLLSLLRHFLNPAPLLRGAPNLFFSFFSLSQFQTVDLDTLLEKEVFFEGKEGIFCVGGWNPEFGLVGVERMKIQCNVCEAAEAKVLCCADEAGLCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEATDPGASSTSLKSDSGEKVSDSSVSRKVSTAPQPSNYNEVLPAEVGGVGEFPSAKVSFGGGSTAGNISQWTIDEFIGLNEFSQNYDYMEGSSRADGGKLGDSDSPVLRSGEEEMEEEDDYLERVPDSSWTVPQIPSPPTSSGLCWPKDHTNLYGSSDSVLFVPDISFSHLQQSQISIFLRRRRQL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02186 654 Gene3D Classic Zinc Finger 363 454 - -
Gma12g02186 654 CDD Bbox1_BBX-like 367 409 - -
Gma12g02186 654 Pfam B-box zinc finger 416 457 IPR000315 GO:0008270
Gma12g02186 654 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 51 236 IPR016064 -
Gma12g02186 654 MobiDBLite consensus disorder prediction 558 612 - -
Gma12g02186 654 ProSiteProfiles Zinc finger B-box type profile. 362 409 IPR000315 GO:0008270
Gma12g02186 654 SMART bboxneu5 414 461 IPR000315 GO:0008270
Gma12g02186 654 SMART bboxneu5 362 409 IPR000315 GO:0008270
Gma12g02186 654 MobiDBLite consensus disorder prediction 598 612 - -
Gma12g02186 654 PANTHER B-BOX ZINC FINGER PROTEIN 22 363 653 - -
Gma12g02186 654 MobiDBLite consensus disorder prediction 472 508 - -
Gma12g02186 654 MobiDBLite consensus disorder prediction 472 506 - -
Gma12g02186 654 CDD Bbox1_BBX-like 418 461 - -
Gma12g02186 654 PANTHER B-BOX ZINC FINGER PROTEIN 18 363 653 - -
Gma12g02186 654 Pfam ATP-NAD kinase N-terminal domain 64 99 IPR002504 GO:0003951|GO:0006741
Gma12g02186 654 Gene3D - 34 158 IPR017438 -
Gma12g02186 654 Gene3D - 159 244 IPR017437 GO:0003951|GO:0019674
Gma12g02186 654 ProSiteProfiles Zinc finger B-box type profile. 414 461 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02186 Gma-Chr12 42863843 42873856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02186 363 654 C2C2-CO-like Transcription Factor Family AT1G78600 48.193 7.38e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma12g02186 NAD_kinase 2.3e-12 CL0240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02186 - - gmx:100819131 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02186 12 42863843 42873856 Gma12g02186 12 42863843 42873856 ECH