Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02177 ATGTTGACTTCTCTAATCTCTTCATCGGGCACAAATTTTCTCAGGGTGCTCATAGTCAAATCTATCATGGTATATACAAAGAAGGAACATGTTGCCATTAAATGGGTGAAGCTACAAGACAATGACGAAAGGGGAACTCTCACATCCCTTTTGGAGACACAATTTTTTAGAGAAGTCACACATCTACCTCGTCTCCACCATCAAAATGTTGTGAAGTACGTAGCCGCATGCAAAGACACACATTTTTATTTTATTCTCACGGAGTATCAACAAAAGGGTTCTTTAAGGGTGTATTTGAACAAGTTAGAGCACAAGCCAATTTCTTCGAAGAAGGTGATATCTTTTGCTTTGGATATTGCACATGGAATGGAGTATGTACACGCACAAGGTATCATTCATAGAGACCTTAAACCGGAGAATGTTCTTGTTGATGGGGAGTTGCACCCCAAAATTGCTGATTTTGGCATTTCTTGTGAGGCTTCAAAGTGTGACTCATTGAGGGGTACTTACCGTTGGATGGCACCAGAGATGATAAAAGGAAAACGCTATGGGAGAGAGGTTGATGTGTACAGTTTTGGGCTTATTTTGTGGGAGCTTGTGAGTGGGACAGTGCCATTTGAGGACATGGGCCCATGCCAAGTTGCTGTTGCGGTGGCAAATAGGAATTCAAGGCCCATTATACCTTCGGATTACCCACATATTTTAGTTTGTATAGATGGAACCATGAATGTAGTGCAAAGGCATTGTAGCGAGGATCATAGTCATCTTTTTTTGATGGAAGGATCATAG 789 0.4144 MLTSLISSSGTNFLRVLIVKSIMVYTKKEHVAIKWVKLQDNDERGTLTSLLETQFFREVTHLPRLHHQNVVKYVAACKDTHFYFILTEYQQKGSLRVYLNKLEHKPISSKKVISFALDIAHGMEYVHAQGIIHRDLKPENVLVDGELHPKIADFGISCEASKCDSLRGTYRWMAPEMIKGKRYGREVDVYSFGLILWELVSGTVPFEDMGPCQVAVAVANRNSRPIIPSDYPHILVCIDGTMNVVQRHCSEDHSHLFLMEGS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02177 262 Pfam Protein kinase domain 22 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g02177 262 CDD STKc_MAP3K-like 31 236 - -
Gma12g02177 262 SMART serkin_6 11 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g02177 262 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 25 235 - -
Gma12g02177 262 PRINTS Tyrosine kinase catalytic domain signature 87 100 IPR001245 GO:0004672|GO:0006468
Gma12g02177 262 PRINTS Tyrosine kinase catalytic domain signature 125 143 IPR001245 GO:0004672|GO:0006468
Gma12g02177 262 PRINTS Tyrosine kinase catalytic domain signature 168 178 IPR001245 GO:0004672|GO:0006468
Gma12g02177 262 PRINTS Tyrosine kinase catalytic domain signature 187 209 IPR001245 GO:0004672|GO:0006468
Gma12g02177 262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Gma12g02177 262 SUPERFAMILY Protein kinase-like (PK-like) 25 236 IPR011009 -
Gma12g02177 262 Gene3D Transferase(Phosphotransferase) domain 1 16 256 - -
Gma12g02177 262 PANTHER SERINE-THREONINE PROTEIN KINASE 25 235 - -
Gma12g02177 262 ProSiteProfiles Protein kinase domain profile. 2 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02177 Gma-Chr12 42772478 42773266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02177 31 232 MAP Kinase Kinase Kinase AT5G58950 58.049 5.28e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma12g02177 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02177 - - gmx:100784279 351.673