Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02161 ATGAAGAGGAACGGTTTGATGAAAGACTACACTCATGACCACAGTTGTGTCAACAAGAACCCAACAACAACAAAAGACTTCTCCCATGTTGTTGCCAACTGCTTTAACAACAACCAAATGGCTAAAGAGTTTTGGGAGTGCAGCAGCATCAGCAACATCAACAAATCTCATCATCACAACATTCACAGCAATAATAATATTGCAGATCAGGACTATGTGAATGGCTTCCCATGGCCACCAAGATCATACACTTGCAGCTTCTGCAGAAAGGAGTTTAAGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCATCACCCCCAACTCATGAAGTTCAAGGTCAAGCTGCTGGCCCTATAAGGCTCAACCTTAATCTTAACCCTAACAACAACTCAGCCTCATCATCATCTTTATCCTTGTTACCACCACCACCATCTTCATCTTCAGCAACTACTACTACTCTTAAGCCTGTTGTCACTTGCACATTGCCCTTGTTTGTTTCTCCCACTCCTCCTTCACCTTCTTCTGAGTTGAAGAGATGGGTTGTTGTGGATGGCATTGTGTTGAACCCTTTGAGCATAATGACCACCCCAGAGCACTACTCCAAGTCAAAGATTCCAGAATCTTTTTCAGCTGGGGTTGGAGAATATCATGATCATGCTTTTGCAAGGGAAGATGGGTGCAAAATGTTGAAGAAGGGTGAGATTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGGTTATGATTTGGATCTGGAGCttcgtttgggtactacttactcttag 819 0.4274 MKRNGLMKDYTHDHSCVNKNPTTTKDFSHVVANCFNNNQMAKEFWECSSISNINKSHHHNIHSNNNIADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTHEVQGQAAGPIRLNLNLNPNNNSASSSSLSLLPPPPSSSSATTTTLKPVVTCTLPLFVSPTPPSPSSELKRWVVVDGIVLNPLSIMTTPEHYSKSKIPESFSAGVGEYHDHAFAREDGCKMLKKGEILRMDLEIGLPRGYDLDLELRLGTTYS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02161 272 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 9 272 - -
Gma12g02161 272 SMART c2h2final6 83 105 IPR013087 -
Gma12g02161 272 MobiDBLite consensus disorder prediction 130 163 - -
Gma12g02161 272 MobiDBLite consensus disorder prediction 111 163 - -
Gma12g02161 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Gma12g02161 272 PANTHER OS07G0101800 PROTEIN 9 272 - -
Gma12g02161 272 SUPERFAMILY beta-beta-alpha zinc fingers 80 109 IPR036236 -
Gma12g02161 272 Pfam C2H2-type zinc finger 83 107 - -
Gma12g02161 272 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Gma12g02161 272 Gene3D Classic Zinc Finger 34 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02161 Gma-Chr12 42495862 42496680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02161 64 268 C2H2 Transcription Factor Family AT3G23130 42.029 1.09e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g02161 zf-C2H2_6 1.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02161 - - gmx:100781722 480.33