Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02160 ATGTCGCTGAGGAAGGTCTTCCGCTCCCGCAAGTTCTCCAAATCGTTCAAAGAGGTGCTGCCGGCGGAGGGCGCCGCCGTCGAGGGCGGGGTCGCCGGCACCGTCGAGGAGGCGGCGAATGGGAATAATAATGGGTGGTCTAGCATGCTGCCGGAGATCCTCGGCGAGATCGTGCGGCGCGTGGACGCCGCCGAGGAGCAGTGGCCGAACCGCCAAAACGTCGTCGCCTGCGCGTGCGTCTGCAAGAGGTGGCGTGACATCACGCGCGAGGTCGTGCGTGTGCCCTCGCATACCGGGAAAATCACTTTCCCTTCGTGCCTTAAACAGCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACCAGAAGACCTCAACGTTTTATTTATATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATTTCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTTGCCAGCAAGCAGATAAGCCCGCAAGTTCCTGCAGGTAATTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGAATGGTTTGCTCATTGAAGTGTCCTGTAACTCCTGTCTCACCAACGAGTGGAAGTTCAGATAGCACGCCTGTCAATGGCCATAAGATGCACGATAAAGAACAAGCTGCATCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAATGTTGGTGCTTGAATTTCCACGGCCGTGTGACGGTGGCCTCGGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAGCCCCTATCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1137 0.5154 MSLRKVFRSRKFSKSFKEVLPAEGAAVEGGVAGTVEEAANGNNNGWSSMLPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPSCLKQPGPRDVPHQCLIKRNQKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVTPVSPTSGSSDSTPVNGHKMHDKEQAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02160 378 ProSitePatterns Tub family signature 2. 363 378 IPR018066 -
Gma12g02160 378 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 378 - -
Gma12g02160 378 SUPERFAMILY F-box domain 43 90 IPR036047 GO:0005515
Gma12g02160 378 Pfam F-box domain 46 92 IPR001810 GO:0005515
Gma12g02160 378 SUPERFAMILY Tubby C-terminal domain-like 95 378 IPR025659 -
Gma12g02160 378 Pfam Tub family 107 373 IPR000007 -
Gma12g02160 378 Gene3D Tubby Protein; Chain A 102 378 IPR025659 -
Gma12g02160 378 PANTHER TUBBY-RELATED 1 378 - -
Gma12g02160 378 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Gma12g02160 378 PRINTS Tubby superfamily signature 177 201 IPR000007 -
Gma12g02160 378 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Gma12g02160 378 PRINTS Tubby superfamily signature 288 305 IPR000007 -
Gma12g02160 378 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Gma12g02160 378 PRINTS Tubby superfamily signature 335 354 IPR000007 -
Gma12g02160 378 PRINTS Tubby superfamily signature 356 378 IPR000007 -
Gma12g02160 378 ProSitePatterns Tub family signature 1. 306 319 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02160 Gma-Chr12 42480370 42485060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02160 1 378 TUB Transcription Factor Family AT1G53320 72.251 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma12g02160 Tub 2.7e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02160 K19600 - gmx:100808096 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02160 12 42480370 42485060 Gma12g02160 12 42480370 42485060 ECH