Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02144 ATGGCAAGCATCAAGTCTAAGCAGCAAGTGTTAAGAGGAAAAAAGACCAAGCAAGAACAAGATAAAACAGTGTCTGAGCCTGGATCCTCATCAGCACCAGCACCACacaagaacaacaacaacaacaacaacaacaacGGAAGAACAGCAACGGAAACGGGCTTTCGCGGGTACGGTGGAGCATGCAGCAACGACGTCGTCGAGGCAGGGGATGGGCGGAAGGACCGTCACAGCAAAGTGTGCACCGCCAAAGGCCCGCGTGACCGACGGGTGAGACTATCGGCCCACACCGCGATCCAATTCTACGACGTCCAGGACCGCTTGGGCTACGACCGCCCCAGCAAGGCCGTCGACTGGCTCATCAACAAGGCCAAGTCCGCCATCGACCAACTTGCCCACCTCCCTCCCTGGAAACCCACTCTCCCTGCACCTCAAAACGACGACGAATCTGACAAGCTTAACCCCAACCCTAACCCTATCCCTATCCATCACCCTGATGCTGAAATTCTCCACCAGTTCAACGAGAACGATACCGAGAACCTTCGGTGCGATGGAGGTGGAGGTTCCAGTTATCTTCCGATGGATAACGACGCGATAAGGTCGTTTTTCCCCACAACGACGTCGTCGTTGGTTCACTTCCAGAGCTACCCACCGGATTTGCTTTCCAGAACCAGTAGCCAGGACCTGCGTCTCTCGCTTCAGTCTTTGCAAGACCCGGTTTTGCTTCACCAGAATCACCACAACAACGAGCACGTGCTTTTTGCTGGAACCGGGTTTGAAAACATGGTAGCGTGGAATAGTAGTAGTAATAATAATAATAATACTGCTTCTAATGATACTTgtggcggtggtggtggtggtggtggtggtggtggtggAGGAGGGTTTGTGTTTAACGCTCCTTCGACTTTGACAGGGCCGGCGACGGTGGCGTCGCCGGCGGTGGTGTTTGGTCATGGTCTTGGTCAAGGCCAGTATTTTACTCAGAGGGGACCCCTTCAGTCCAGTAACAGCCCTTCCGTTCGTGCGTGGATTGACGCGCCGTCGTTCGTCGCTGCCGCCGCCGATCATCGGCATCATCATCATCACTATCTGTCTCCCGCGGCGGCCGCGGCGGCGTTGGTGTATCAGTCTGCTCCTTCAACGGCGGCATTTGCAGCGGCGCCCGGTGGCTTCTCGGGATTCCGCGTGCCGGCACAAATTCAGGGCGAGGAGGAGCATGACGGCGGCGTGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCACCGTTGA 1275 0.5286 MASIKSKQQVLRGKKTKQEQDKTVSEPGSSSAPAPHKNNNNNNNNNGRTATETGFRGYGGACSNDVVEAGDGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLAHLPPWKPTLPAPQNDDESDKLNPNPNPIPIHHPDAEILHQFNENDTENLRCDGGGGSSYLPMDNDAIRSFFPTTTSSLVHFQSYPPDLLSRTSSQDLRLSLQSLQDPVLLHQNHHNNEHVLFAGTGFENMVAWNSSSNNNNNTASNDTCGGGGGGGGGGGGGGFVFNAPSTLTGPATVASPAVVFGHGLGQGQYFTQRGPLQSSNSPSVRAWIDAPSFVAAAADHRHHHHHYLSPAAAAAALVYQSAPSTAAFAAAPGGFSGFRVPAQIQGEEEHDGGVSDKPSSASSDSHR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02144 424 MobiDBLite consensus disorder prediction 398 424 - -
Gma12g02144 424 MobiDBLite consensus disorder prediction 401 424 - -
Gma12g02144 424 MobiDBLite consensus disorder prediction 23 48 - -
Gma12g02144 424 Pfam TCP family transcription factor 72 136 IPR017887 -
Gma12g02144 424 ProSiteProfiles TCP domain profile. 73 131 IPR017887 -
Gma12g02144 424 MobiDBLite consensus disorder prediction 1 48 - -
Gma12g02144 424 PANTHER TRANSCRIPTION FACTOR TCP4 72 423 - -
Gma12g02144 424 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 72 423 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02144 Gma-Chr12 42284457 42286237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02144 59 422 TCP Transcription Factor Family AT1G53230 41.895 5.63e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma12g02144 TCP 9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02144 - - gmx:100802063 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02144 12 42284457 42286237 Gma13g02409 13 38857883 38859043 ECH
Gma12g01482 12 29278343 29280277 Gma12g02144 12 42284457 42286237 ECH
Gma06g02556 06 48751635 48753217 Gma12g02144 12 42284457 42286237 ECH
Gma12g01968 12 40274720 40277166 Gma12g02144 12 42284457 42286237 ECH
Gma13g02588 13 40739512 40740927 Gma12g02144 12 42284457 42286237 ECH
Gma12g02144 12 42284457 42286237 Gma06g02556 06 48751635 48753217 ECH
Gma12g02144 12 42284457 42286237 Gma12g02144 12 42284457 42286237 ECH