Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02127 ATGGACCACACCGAAGCTCACTTGCCACCTGGTTTTCGGTTCCACCCAACTGATGAGGAGCTCATAACTTACTACCTTCTCAAGAAGGTTCTTGACAGCACCTTCACTGGTAGAGCCATAGCTGAAGTTGATCTCAACAAGAGTGAGCCATGGGAGCTCCCTGAGAAAGCTAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGAAAGTACCCAACTGGGTTAAGAACCAATAGGGCTACTGAAGCTGGGTACTGGAAAGCCACAGGGAAAGATAGAGAGATTTACAGCTCCAAAACTTGTTCTTTGGTGGGGATGAAGAAAACCTTGGTTTTCTACCGTGGTAGAGCTCCAAAGGGAGAGAAAAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCACTACCTTTCTCGCAACTCCGAGGATGAGTGGGTCATATCACGTGTGTTTCGGAAGAGTAACACCACACCGATCACCAATGGAGGCTCCACCATGTCCGCTTCTACTAACTCCAAGAAGACAAGAATTAACAACACCACCTCTCTTATCCATGAACCAGGTTCACCCTCTTCAGTTTTCCTTCCACCTCTTCTAGACTCTTCTCCCTACACCAACACCACCACCAACACCTTCACCGACCATCACAATAGTTCTTATGATAGTGCCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATAGCTGCAGCAACAGCTGTTGTCTCCCCCAACAACAACTTCAACAATGCAAGCTTCGACCTTCCACCTTCTCAGCCTCTTGCAACCGACCCTTTTGCAAGGTTTCAGAGAAACGTTGGTCTTTCTGCTTTTCCAAGTTTGAGGTCTCTACAAGACAACCTTCAGCTACCTTTCTTCTTCTCCACGGCGGCGGCGCCTCCCTTCTCCGGCGGAGGCTCCGGCGACTTCCTCAGCTGGCCAGTGCCGGAGGATGGTGTTTCCAACATGCCACTGGGCGTGTCGGAGCTTGATTGCATGTGGGGCTACTAA 1032 0.4952 MDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSEDEWVISRVFRKSNTTPITNGGSTMSASTNSKKTRINNTTSLIHEPGSPSSVFLPPLLDSSPYTNTTTNTFTDHHNSSYDSATKKEHVSCFSTIAAATAVVSPNNNFNNASFDLPPSQPLATDPFARFQRNVGLSAFPSLRSLQDNLQLPFFFSTAAAPPFSGGGSGDFLSWPVPEDGVSNMPLGVSELDCMWGY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02127 343 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Gma12g02127 343 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Gma12g02127 343 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Gma12g02127 343 SUPERFAMILY NAC domain 6 160 IPR036093 GO:0003677|GO:0006355
Gma12g02127 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 312 - -
Gma12g02127 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02127 Gma-Chr12 42101297 42103089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02127 7 343 NAC Transcription Factor Family AT5G53950 52.989 9.28e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma12g02127 NAM 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02127 - - gmx:100815574 687.952