Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02102 ATGGTTGCTGTTTTTCAATCATTTGCCCCTCAATCTGCCCCGGACCCTCTTACCTTTTCATATTTTATTGCTAATGCTTCTAATGTGATTCTAATATTGTTTGTATGTCTTTGTATAGCCACCATATTTTCAACAATAGTTCTTCTTCTTCTATTAAAAATCTTTGAAACTATATCCGACATTCTTCTTGAAAGACTTGAGGATGATGTTGAAGAGGGAACAATAAGGACTTTGGTAGTTGAATCTTTTCTGACTTACCAAGATGCTTTCAATGAAATAAGTGATGGCAGGGAAAGATTACAAACATATATACAAGCTTCTGAGATGAGACCAATTCATAAAGGGCCATCAATCAAACTGCCACAACTCGTAAGTTATGGACAAGATCAAGATGATGAGTTGAGATCATTTTGTAGTAGTGATTGTGTCATATGTTTGGAGAGCTTCATCACCGGGGAATCTTGCCAAATTCTTCCACCTTGCAATCACTTATTTCATTCTTACTGCATAGAGCATTGGTTGAAGGACAATGCCACTTGCCCGGTTTGTCGAAACTGTTTACTAGAAACATAA 573 0.3665 MVAVFQSFAPQSAPDPLTFSYFIANASNVILILFVCLCIATIFSTIVLLLLLKIFETISDILLERLEDDVEEGTIRTLVVESFLTYQDAFNEISDGRERLQTYIQASEMRPIHKGPSIKLPQLVSYGQDQDDELRSFCSSDCVICLESFITGESCQILPPCNHLFHSYCIEHWLKDNATCPVCRNCLLET 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02102 190 SMART ring_2 142 183 IPR001841 -
Gma12g02102 190 Pfam Ring finger domain 141 184 IPR001841 -
Gma12g02102 190 PANTHER RING-H2 FINGER PROTEIN ATL3-LIKE 12 190 - -
Gma12g02102 190 SUPERFAMILY RING/U-box 141 188 - -
Gma12g02102 190 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Gma12g02102 190 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 12 190 - -
Gma12g02102 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 188 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02102 Gma-Chr12 41797566 41798138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02102 31 190 C3H Transcription Factor Family AT1G53010 33.133 1.88e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02102 - - pvu:PHAVU_005G065200g 216.468