Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02088 ATGAGCAAAGCCCTGGGAGCAACTACAGAAGAAGACGAAGAAGACGACCAACAACATCCACAACAAGATTGTTTCTACGACTCACACGACCGTTTACTTTCACTCTCTTCTTCATGCTCTTGTTCCAACTCCAACTCCGACAACGAAAACGACACCCAAGACCACCAAAACGACACCAGCCTCCCCAATTTCACCAACTACGACATATGGATCTCTCAACCCTCCTCCGTCTCCGAACGCCGCACGCGCCTTTTACTTTCCCTCGGACTCTCTTCCCTCACGCGCTCAAACCCTCGCGATCGCGCGTCCCCTCTCCGATCCGTATCCGACACCACCGCAAACCCTAACAAGCCACCAAATCCAAAACCACCCCCACCGCCGCCGCCACCACCGATTGAAGAGCTGTGCACGATTCGAGATCTCGATAACGGGAAAGAGTTCGTCGTGAACGAATTGGAGAATCTGCGGGAGGTTGCCACGGGGCGGCAATTGACGATGGAGGAGTTTGAGATGACGGTGGGGCATTCTCCCATCGTTCAGGAACTGATGCGGCGGCAGAACGTTGAAGAGGCGAGCGTTGATTCCAATGCGGGTGGTTCTAAAGTGAAGAAGAAGGGGACGGGGTGGTTGAAGAGTATCAAGAGCGTGGCGAGTTCGGTGGCGGGGTATAGGGATCGCCGGAGTAGCGACGAGAGGGACACGTCGTCGGAGAAGGGCGGGAGGCGGTCCAGCTCCGCCACCGACGACAGCCAGGAGGGAGGGGGCGCGTTTCACGGGCCGGAGAGGGTGAGGGTGAAGCAGTATGGGAAGAGTTGCAAGGAGGTGACTGCTTTGTACAAGAGTCAGGAGATTCAGGCGCATAGTGGGAGCATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATTTGGCGAGTGCTGGGGAGGATTGCGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGAAAGGGGGAGTTGTTGTTGTTGGATAGGGAGAAGGGGGAGGAAGGGAATGGGAATGTGGATATGTTTTTGGTGGTGAATGGGTCCCCCATGGCGGATGGGGAGAGGAAGAGGAAGGGGAGGTCGAGTGTGAGTAGGAAGTCCTTGAGCTTGGACCAGTTTGTGGTGCCGCAGACCGTGTTTGCGCTTACTGACAAACCAGTTTGCTCCTTCCAGGGACATCTTCATGATGTGCTTGACCTCTCATGGTCTAAAACTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGTTGTGGCATCTGTCTAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCATTGGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACGTCCGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCACGAATTCGGGTGGTTGATGGTGTTGATCTAGTTCATAAGTTTAAAGGCTTTCGGAATGCAACTAGTCCAATTTCAGCATCCCTCACGGCAAATGGTAAATATGTTGTCGCAGCAAGTGAGGACTCCCATGTATTCATCTGGAAAAATGAAGCTGATTGCAGACCAAACAGAAGTAAAGGTGTGACTGTCACACGATCATATGAGCATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGCCTGGTATGGGTGATGAATGGGACATGCAAGATACGTTTTCCGGAGAACAGCCCGAGATTGATAACCATGCTGATGAAGTCTCATCAGCCAACCATCCTCCTACCCCTGTAGAGGAAAACTTTGTTACTGAGGGTTCAAGATCTGCATCAGGTTATAGCAACAGTCCACGCCATGCAACCATTGCAAGTGCAACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTGGCTACAAGAACCCAAAGCCCTCGTGTCAGTATGGATTTCTCTAACGGGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTTTCAGAACCTATCAAAGCTAACTTCAGCTCTTCTGCATTGAGGTGCAAGAGGGAATTCGAACAAAAGCTCTGTGCTGTGAGGGCCGAAACAGTGGCTACAGCCTCTCCAGCAGTTACCAAGTCTACACCAGAAGGCAAGAAAACATTGAGGAAGGGCAGTGTTGTGATAACTGGGGCTTCATCTGGACTAGGCCTGGCCACTGCTAAGGCTTTGGCTGAGACGGGAAAATGGCATGTAATAATGGCCTGCAGGGATTACCTCAAAGCTGCAAGAGCTGCAAAATCCGCTGGCATGGCTAAGGAAAACTACACCATCATGCACTTGGACCTTGCCTCGCTCGACAGTGTCCGCCAATTTGTTGATAACTTCAGAAGATCAGAAATGCCGTTAGATGTGCTGGTTTGCAATGCTGCTGTTTACTTGCCAACTGCTAAGGAACCTACCTTCACTGCTGAGGGCTTTGAACTTAGTGTTGGGACAAATCATCTGGGGCATTTCCTCCTCTCGCGCCTGTTGCTTGAGGACTTGGAAAAATCCGATTACCCTTCAAAGCGCTTGATCATCGTTGGTTCAATAACAGGGAACACAAACACATTGGCTGGTAATGTACCTCCCAAGGCTAACCTTGGTGACTTGAGGGGACTTCAGGGTGGTTTGAATGGGCTAAACAGCTCAGCCATGATTGATGGTGGAGACTTCGATGGTGCCAAGGCGTACAAGGACAGCAAAGTCTGCAATATGCTCACAATGCAAGAATTCCACAGACGATTCCATGAGGAAACTGGAATCACATTTGCTTCCCTTTACCCCGGTTGCATTGCCACAACAGGCCTGTTCAGAGAGCACATTCCCTTGTTCAGAACTCTGTTCCCTCCATTCCAGAAGTACATAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAACAAAGCATCAGCTTCGTTTGAAAACCAGTTGTCTCAGGAGGCCAGTGATACAGAGAAGGCTCGTAAGATCTGGGAGATTAGTGAGAAACTTGTTGGTTTTGCCTAA 3387 0.4883 MSKALGATTEEDEEDDQQHPQQDCFYDSHDRLLSLSSSCSCSNSNSDNENDTQDHQNDTSLPNFTNYDIWISQPSSVSERRTRLLLSLGLSSLTRSNPRDRASPLRSVSDTTANPNKPPNPKPPPPPPPPPIEELCTIRDLDNGKEFVVNELENLREVATGRQLTMEEFEMTVGHSPIVQELMRRQNVEEASVDSNAGGSKVKKKGTGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQEGGGAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEEGNGNVDMFLVVNGSPMADGERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFQGHLHDVLDLSWSKTQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVFIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDEWDMQDTFSGEQPEIDNHADEVSSANHPPTPVEENFVTEGSRSASGYSNSPRHATIASATNSYFFDRISATWPEEKLLLATRTQSPRVSMDFSNGAASLVPASFSVLKEGKSGVSLKDSTLFGLSFSEPIKANFSSSALRCKREFEQKLCAVRAETVATASPAVTKSTPEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDYLKAARAAKSAGMAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLEKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLQGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKASASFENQLSQEASDTEKARKIWEISEKLVGFA 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02088 1128 Gene3D - 240 352 IPR015943 GO:0005515
Gma12g02088 1128 MobiDBLite consensus disorder prediction 666 689 - -
Gma12g02088 1128 SUPERFAMILY WD40 repeat-like 279 601 IPR036322 GO:0005515
Gma12g02088 1128 MobiDBLite consensus disorder prediction 116 132 - -
Gma12g02088 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 325 IPR001680 GO:0005515
Gma12g02088 1128 PRINTS G protein beta WD-40 repeat signature 410 424 IPR020472 -
Gma12g02088 1128 PRINTS G protein beta WD-40 repeat signature 303 317 IPR020472 -
Gma12g02088 1128 PRINTS G protein beta WD-40 repeat signature 452 466 IPR020472 -
Gma12g02088 1128 MobiDBLite consensus disorder prediction 31 65 - -
Gma12g02088 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 466 IPR001680 GO:0005515
Gma12g02088 1128 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 135 735 - -
Gma12g02088 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 426 - -
Gma12g02088 1128 MobiDBLite consensus disorder prediction 94 115 - -
Gma12g02088 1128 Pfam short chain dehydrogenase 818 960 IPR002347 -
Gma12g02088 1128 PANTHER WD REPEAT DOMAIN 44 14 102 IPR040324 -
Gma12g02088 1128 Gene3D - 366 623 IPR015943 GO:0005515
Gma12g02088 1128 MobiDBLite consensus disorder prediction 645 689 - -
Gma12g02088 1128 Pfam WD domain, G-beta repeat 283 315 IPR001680 GO:0005515
Gma12g02088 1128 Pfam WD domain, G-beta repeat 428 465 IPR001680 GO:0005515
Gma12g02088 1128 Pfam WD domain, G-beta repeat 387 422 IPR001680 GO:0005515
Gma12g02088 1128 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 813 1095 IPR036291 -
Gma12g02088 1128 MobiDBLite consensus disorder prediction 1 65 - -
Gma12g02088 1128 MobiDBLite consensus disorder prediction 221 263 - -
Gma12g02088 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 317 - -
Gma12g02088 1128 MobiDBLite consensus disorder prediction 94 132 - -
Gma12g02088 1128 PANTHER WD REPEAT DOMAIN 44 135 735 IPR040324 -
Gma12g02088 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 466 - -
Gma12g02088 1128 Gene3D - 803 1128 - -
Gma12g02088 1128 PRINTS Glucose/ribitol dehydrogenase family signature 817 834 IPR002347 -
Gma12g02088 1128 PRINTS Glucose/ribitol dehydrogenase family signature 892 903 IPR002347 -
Gma12g02088 1128 PRINTS Glucose/ribitol dehydrogenase family signature 1025 1042 IPR002347 -
Gma12g02088 1128 MobiDBLite consensus disorder prediction 224 245 - -
Gma12g02088 1128 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 814 1128 IPR005979 GO:0016630
Gma12g02088 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 432 IPR001680 GO:0005515
Gma12g02088 1128 CDD LPOR_like_SDR_c_like 815 1126 - -
Gma12g02088 1128 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 14 102 - -
Gma12g02088 1128 SMART WD40_4 277 316 IPR001680 GO:0005515
Gma12g02088 1128 SMART WD40_4 559 600 IPR001680 GO:0005515
Gma12g02088 1128 SMART WD40_4 468 506 IPR001680 GO:0005515
Gma12g02088 1128 SMART WD40_4 385 423 IPR001680 GO:0005515
Gma12g02088 1128 SMART WD40_4 426 465 IPR001680 GO:0005515
Gma12g02088 1128 SMART WD40_4 513 558 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02088 Gma-Chr12 41633204 41645265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02088 380 597 U-box Gene Family AT1G04510 27.731 4.96e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02088 K20241 - gmx:100806654 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02088 12 41633204 41645265 Gma12g02088 12 41633204 41645265 ECH