Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02082 ATGGGGAGCACCGACTCATCAAGCGGTTCACAACAACCGAACCTGCCACCTGGGTTTCGGTTCCACCCCACCGATGAAGAGCTTGTGGTTCACTACCTCAAGAAAAAAACAGCTTCTGCTCCTCTTCCGGTAGCCATAATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGCTAAGGCCGCGTTTGGGGAGCAGGAGTGGTATTTCTTTACACCGAGGGACAGGAAGTATCCGAACGGCGCGAGGCCAAACAGGGCGGCCACATCAGGGTATTGGAAGGCTACTGGGACTGATAAGCCTGTGTTGACCTCTGGTGGGACCCAAAAGGTTGGGGTGAAGAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGGATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGAAAGGGAAGATTCAATGGATGACATGATTGGAGGGATTCCTCCATCCATCAACGTGGGCCACATGAGTGCGAGGTTTCATCATCTTTCAAAGATGACCACAGCCTACAACAGCGGTGCAATGTTGGAAAATGAACACAACTTGTTGGAAGGGATGATGATAGGTAATAACAACGGAGGGATGAACACAACTACTACTGCTACTACTACGCCTGGTGCCATGTCATCTCACTTAGGGGGATCCAAGGCAGAGCTTTCTTTTGTGCCAACCATGACTCACTCTTCAAACACTTCTAAGAGAACACTCTCATCACTGTATTGGAACGATGAGGATGTGACAGGAACATCATCTTCGAACAGAAGGTTCAATTTGGAAAGTGGGGACAATAATAATCATGGAAGTGTTGTGAGGGCTGATCAAGAGAATGGCACTGCTTCCTCTATTGCCACTCTGCTTAATCAACTCCCTCAAACCCCTTCATTGCACCAACAATCAATGTTGGGGTCAATAGGCGATGGACTTCTAAGAACAACATACCAAATACCAGGAATGAATTGGTATGCTTAG 1128 0.4814 MGSTDSSSGSQQPNLPPGFRFHPTDEELVVHYLKKKTASAPLPVAIIAEVDLYKFDPWELPAKAAFGEQEWYFFTPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPPGCDLGNKKNTLRLDDWVLCRIYKKSNTHRSPMEHEREDSMDDMIGGIPPSINVGHMSARFHHLSKMTTAYNSGAMLENEHNLLEGMMIGNNNGGMNTTTTATTTPGAMSSHLGGSKAELSFVPTMTHSSNTSKRTLSSLYWNDEDVTGTSSSNRRFNLESGDNNNHGSVVRADQENGTASSIATLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWYA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02082 375 SUPERFAMILY NAC domain 9 177 IPR036093 GO:0003677|GO:0006355
Gma12g02082 375 MobiDBLite consensus disorder prediction 1 20 - -
Gma12g02082 375 MobiDBLite consensus disorder prediction 300 323 - -
Gma12g02082 375 ProSiteProfiles NAC domain profile. 15 177 IPR003441 GO:0003677|GO:0006355
Gma12g02082 375 Gene3D NAC domain 24 182 IPR036093 GO:0003677|GO:0006355
Gma12g02082 375 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 351 - -
Gma12g02082 375 MobiDBLite consensus disorder prediction 1 17 - -
Gma12g02082 375 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Gma12g02082 375 PANTHER NAC TRANSCRIPTION FACTOR 56 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02082 Gma-Chr12 41522533 41524105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02082 19 375 NAC Transcription Factor Family AT3G15510 53.067 5.94e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma12g02082 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02082 - - gmx:100784578 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02082 12 41522533 41524105 Gma12g02082 12 41522533 41524105 ECH
Gma13g02479 13 39648438 39650565 Gma12g02082 12 41522533 41524105 GST