Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02067 ATGAACAGCAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAGCACAAGAAGATACTGGAAGGGCTTCTTAAATTACCAGAGAATAGGGGATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCTGCAACCCTGGACACTTGGCTTCCAGATCAAGTTGCATTCATCCAATCAATGGGAAACGAAAAAGCAAATAGTTTCTGGGAAGCAGAATTACCTCCAAATTATGACAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGACGAGAAGAGATGGATTCCAAGAGATGGGAATTCAAAAACACCTTCTGGATTGAGGGAAGAGAAAAGTCCTTCACATTGGCAGAGGCCTGTGGAGAGAAGTGGTTATGCTGCTGTTTCTGAAAATAAATTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTTCTACCACAAGAATTAATGTTCCTGCTCCTCCCAGAGCATCTGAGCAGGTAACTCCTATTACCAAACCTCAGCATGTGGAGAAAGTGGAACCAGTAGCACCACAACCACCAGCTTCCCAACCACAAGCTGAAACATCAAAGCAAGCTACAGACACAGTTCAAAATATCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGGCCCTAATGAAAATGGCTCTGAGGCAGCTGGTACAACTACTGATGATAATCACTGGGCAGGTTTTCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTAGTCCGCTGAAAGCAGCTGATAGTACTCCCGTGTCTGCATCTGGAATTGAGGATCTTTTCAAAGATTTATCTCCTGTGACTCCAAGCTTGACTCCAGAAAAACCACAAAAAGATGTGAAAAATGATATCATGCGCCTCTTTGAGAAGGGCAATATAGTGTCTCCATTTTCTATGCATCAACAGCAGCTTGGCATGCTAGCACACCAACAGTCTCTTCTAATGGCTGCTGCAGCTAAATCTACTGGTGGGGATCCCAGGTATCCTGCTAACATACAACAACCTAGGCCACCAAATGTTCCTATCCAAAGTTGGCCAGCTACTGGCTACTCAATTCCTGGAGTAATGCCCATGGCAACTAACTTGTTTCTCCCCTTTCAGGGTCAGCCTAGGAGCATGACCCCAGCACACTTTGCAGGGAGCTCTGTTCAATATCCACCATCCAGTTTCTATGGTATGGGTCAAGTTGCTCCTCCAGTTAACGGTATGATGACGACAATGGGAGTGAATAAACCTCAGTCAGGAGCTCCTGCAGTGTCATCTAGCCCTACACAGTCTGCGAAGGATTATGATTTTTCCTCCTTAACACAGGGGATGTTTACGAAACAGTGA 1449 0.4451 MNSKANVSKELNAKHKKILEGLLKLPENRGCADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPDQVAFIQSMGNEKANSFWEAELPPNYDRVGIENFIRAKYDEKRWIPRDGNSKTPSGLREEKSPSHWQRPVERSGYAAVSENKFEERKKIQPSNAISTTRINVPAPPRASEQVTPITKPQHVEKVEPVAPQPPASQPQAETSKQATDTVQNIPPKVDYATDLFNMLSMDGPNENGSEAAGTTTDDNHWAGFQSAAEVSTAEKTSPLKAADSTPVSASGIEDLFKDLSPVTPSLTPEKPQKDVKNDIMRLFEKGNIVSPFSMHQQQLGMLAHQQSLLMAAAAKSTGGDPRYPANIQQPRPPNVPIQSWPATGYSIPGVMPMATNLFLPFQGQPRSMTPAHFAGSSVQYPPSSFYGMGQVAPPVNGMMTTMGVNKPQSGAPAVSSSPTQSAKDYDFSSLTQGMFTKQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02067 482 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Gma12g02067 482 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gma12g02067 482 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Gma12g02067 482 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gma12g02067 482 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Gma12g02067 482 MobiDBLite consensus disorder prediction 124 150 - -
Gma12g02067 482 CDD ArfGap 19 117 - -
Gma12g02067 482 PANTHER ARF GTPASE ACTIVATOR 1 482 - -
Gma12g02067 482 MobiDBLite consensus disorder prediction 124 145 - -
Gma12g02067 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 482 IPR044520 GO:0005096
Gma12g02067 482 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Gma12g02067 482 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Gma12g02067 482 MobiDBLite consensus disorder prediction 203 224 - -
Gma12g02067 482 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Gma12g02067 482 MobiDBLite consensus disorder prediction 450 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02067 Gma-Chr12 41397945 41402781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02067 16 123 C2H2 Transcription Factor Family AT4G05330 47.414 6.47e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02067 K12486 - gmx:100780452 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02067 12 41397945 41402781 Gma12g02067 12 41397945 41402781 ECH