LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g02062	ATGGAGGACGCGGAAGCGGCGAACACGCTTCGCATTCTGGTGGCGACGGACTGCCACCTCGGTTACATGGAGAAGGATGAGGTGCGCCGCCACGACTCCTTCCACGCCTTCGAGGAGATTTGCGCCGTCGCCGAGCGCCACCGCGTCGACTTCGTCCTCCTCGGCGGCGACCTCTTCCACGAGAACAAGCCCTCTCGCTCCACGCTCGTCAAGGCCATCGAGATTCTCCGCCGCTACTGCCTCAACGACCGCCCCGTCCCCTTCCAGGTCGTCAGCGACCAGACGCTCAATTTCCAGAACGCGTTTGGTCATGTGAACTATGAGGATCCTCACTTCAATGTTGGATTGCCGGTATTTACTATTCACGGAAACCATGACGATCCTGCTGGCGTGGACAACCTTTCTGTAGTCGATATTCTCTCGGCATGTAATCTAGTCAACTACTTTGGGAAAACAGTTCTTGGGGGTTCTGGTGTCGGTCAGATCACTATCCACCCTATTCTTATCAAGAAGGGTTCAACATCTGTAGCTCTGTATGGTCTGGGAAACATTAGAGATGAAAGGCTTAATAGGATGTTTCAAACACCGCATGCTGTTCAATGGATGCGACCTGAATCTCAGGAAGGGTGTCAAGTGTCTGATTGGTTCAACATTCTTGTACTTCATCAGAACAGGGTTAAAACAAATCCAAAAAATGCAATAAATGAGCACTTCTTGCCACGCTTCCTAGACTTCATTGTGTGGGGCCATGAACATGAATGTTTGGTTGACCCGCAGGAAGTTCCAGGAATGGGATTTCACATTTCACAACCAGGGTCATCAGTTGCTACATCACTTATTGATGGAGAATCAAAGCCGAAGCATGTACTTCTTCTGGAAATTAAGGGAAATCAATATCGCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTGAGTATACTGAGGTTATACTAAAAGATGAGCCGGACATTGATCCCAATGATCAAAGTTCTATTCTTGAACACCTAGACAAAGTGGTTGGAAAACTTATAGAAAAGTCTAGTAAGCAGGTCATCAATAGAAAAGAACTCAAGCTTCCACTAATACGTATCAAGGTAGATTACTCTGGATTTATGACTATAAATCCTCAAAGATTTGGGCAGAAATATGTTGGGAAGGTTGCAAATCCCCAAGACATTCTCATTTTCTCAAAGGCTACAAAAAGGGCCAAGGTTGAAGGAAAAATTGATGATTCAGAACGACTTCGTCCAGAAGAATTAAACCAACAGAACATAGAGGCTTTGGTTGCTGAAAGTAATCTGAAAATGGAGATACTGCCAGTTAATGATTTGGATATTGCATTGCAAAATTTTGTGAACAAAGATGATAAAATGGCATTTTACTCTTGTGTAAAATACAATATCGAGGAAACACGAAATAAACTTGCTAAGGATTCAGACAACGTGAAGTTTGAAGAGGAAGATTTAATTGTTAAAGTTGGAGAATGCTTGGAGGAACGTGTCAAGGAACGATCTGTACACTCCAAGGAACCCACACAGCTCACTGCTGATGCTCAACCATGGAAGGATTTCCAAGGCAGAAGTGCTGCTGGAACTGGAAGTGCAGTTTCCTTTAGTGATGATGAAGATGCCATGCCAGTATCTAGTTCAAAGCCAAGTACTAGAGGTCGAAAAGGGTCATCTGGTGCGTCTCAAACTACAACCAGAGGAAGGGGCAGGGGAAGAGGAAGAGGTAGAGGTTCCAGCACCATGAAGCAGACAACTATTGATGGAGCTTTAGGGTTTCGCGTTTCTCAGAGGTCTGCATCAGTTGCTGCAGCAACTGCCATCCGAAGTGGTGCTGACGATGATAACTTGGCTTCTGCTTCAAGTGATGATGCCAATAAAAATGATGTTGAAGAGATCGATGATAGTTCGGAAAATGAATCCAATCTACCAGGACAGAAGAGGGCTGCTTCAAAGGGAAGAGGTAGAGGATCTACACAGTCTTCTAAACGCGGAAGGAAATCAGATAACTCTTCAATCCATAGAATGCTCGTGAacaatgatgatgacgatgacgatgacgacaccgacATCAGAAAGAGATTAAATAAGTCTCAACCTCGGGTTACTAAAAGCTATGGAGCTCTAAGAAGAGGTTTAAAATTCATTAATTTTGGGGATAACATTCTGGAAGGAACATTACCAACATGGATAGGCCATAACCTTGATGGTTTGATTGTTTTGCGTTTACGAGGAGAGATACCCCAAGGTATAACAACACTTACGGCGCTAGCTGGATTAAACCTTTCAGGAAATAATCTCACGGGATTCATTCTTATCAAGAAACCATCTTTATGGTTCACGGAGACATGCCTACTTTCAGCTCACGAACAACACAAAAATGATTGGCTTGTCACCACTGGTTTTGCGATTCTACGGCAGCCAGACTTTGCTAAATCGTGTTGGAAGTTGGAAGTCATGGCAGCAACATTGATGGCAGCAACAACAAGTTCTGGTACTCTTAAAGCAACTCCTTTCCTTGGCCAAGGCAAGGGTGCCAATGCCAATGCTCTTAGGGATGTTGTCTCCATGGGAACTGGGAAGTACACCATGGGCAATGATTTGTGGTATGGACCAGACAGAGTGAAATACTTGGGACCCTTCTCAGCTCAGACCCCTTCATACTTGAAAGGAGAATTCCCTGGGGATTATGGATGGGACACTGCTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTAGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGTTCAAAGCTGGAGCCCAAATATTCTCCGAAGAATCCTGCTCAGAGCTGATTTTTGAGCTTCTCTCATTCTTGCAACTGGCTCAAATAAACCGTATGGCCATGGTGGTGTGGGGAATACGGAGGAGACGAAATGATAAACTCTGGAATAATATCCAGTTTTCAGACCAGCTAGTGGTGAGGAGGATCATCTATAAACAAACAAAAAAGATGTTTTATGAGTTCATTTGA	3093	0.4449	MEDAEAANTLRILVATDCHLGYMEKDEVRRHDSFHAFEEICAVAERHRVDFVLLGGDLFHENKPSRSTLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQNAFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITIHPILIKKGSTSVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLMSVRPFEYTEVILKDEPDIDPNDQSSILEHLDKVVGKLIEKSSKQVINRKELKLPLIRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKATKRAKVEGKIDDSERLRPEELNQQNIEALVAESNLKMEILPVNDLDIALQNFVNKDDKMAFYSCVKYNIEETRNKLAKDSDNVKFEEEDLIVKVGECLEERVKERSVHSKEPTQLTADAQPWKDFQGRSAAGTGSAVSFSDDEDAMPVSSSKPSTRGRKGSSGASQTTTRGRGRGRGRGRGSSTMKQTTIDGALGFRVSQRSASVAAATAIRSGADDDNLASASSDDANKNDVEEIDDSSENESNLPGQKRAASKGRGRGSTQSSKRGRKSDNSSIHRMLVNNDDDDDDDDTDIRKRLNKSQPRVTKSYGALRRGLKFINFGDNILEGTLPTWIGHNLDGLIVLRLRGEIPQGITTLTALAGLNLSGNNLTGFILIKKPSLWFTETCLLSAHEQHKNDWLVTTGFAILRQPDFAKSCWKLEVMAATLMAATTSSGTLKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEESCSELIFELLSFLQLAQINRMAMVVWGIRRRRNDKLWNNIQFSDQLVVRRIIYKQTKKMFYEFI	1030

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g02062	1030	Gene3D	Chlorophyll a/b binding protein domain	879	1011	-	-
	Gma12g02062	1030	TIGRFAM	mre11: DNA repair protein (mre11)	8	401	IPR003701	GO:0004520\|GO:0006302\|GO:0008296\|GO:0030870
	Gma12g02062	1030	Pfam	Mre11 DNA-binding presumed domain	300	452	IPR007281	GO:0004519\|GO:0005634\|GO:0006302\|GO:0030145
	Gma12g02062	1030	SUPERFAMILY	Metallo-dependent phosphatases	10	346	IPR029052	-
	Gma12g02062	1030	MobiDBLite	consensus disorder prediction	616	701	-	-
	Gma12g02062	1030	Pfam	Calcineurin-like phosphoesterase	10	254	IPR004843	GO:0016787
	Gma12g02062	1030	SMART	Mre11_DNA_bind_2	299	452	IPR007281	GO:0004519\|GO:0005634\|GO:0006302\|GO:0030145
	Gma12g02062	1030	Coils	Coil	469	489	-	-
	Gma12g02062	1030	Gene3D	-	5	310	IPR029052	-
	Gma12g02062	1030	MobiDBLite	consensus disorder prediction	544	572	-	-
	Gma12g02062	1030	Pfam	Chlorophyll A-B binding protein	889	981	IPR022796	-
	Gma12g02062	1030	PANTHER	DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	5	688	-	-
	Gma12g02062	1030	CDD	MPP_Mre11_N	11	279	IPR041796	-
	Gma12g02062	1030	Gene3D	Mre11, capping domain	311	409	IPR038487	-
	Gma12g02062	1030	SUPERFAMILY	L domain-like	715	774	-	-
	Gma12g02062	1030	Gene3D	Ribonuclease Inhibitor	677	794	IPR032675	-
	Gma12g02062	1030	SUPERFAMILY	Chlorophyll a-b binding protein	871	981	-	-
	Gma12g02062	1030	MobiDBLite	consensus disorder prediction	503	593	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g02062	Gma-Chr12	41333103	41351763	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g02062	850	971	Chloroplast and Mitochondria Gene Families	AT2G05070	62.016	1.52e-43	157

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g02062	K10865		-	gmx:100801335	1351.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma12g02062	12	41333103	41351763	Gma12g02062	12	41333103	41351763	ECH