Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02057 ATGGCAAAGTCTTCTAGTGAGAAGAATGGACTGAAGAAGGGTCCATGGACTCCAGAGGAAGATCAGAAACTCATCGATTACATTCAGAAACATGGACATGGGAAATGGAGAACCCTTCCCAAAAATGCAGGACTAAAAAGATGTGGAAAGAGTTGCCGGCTTCGCTGGGCAAACTACTTGAGGCCCGATATAAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATCATTCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACTCACATCAAGAAAAAGCTATTGAAGATGGGGATTGATCCTGTGACTCACACACCTCGCCTTGATGTTCTACAACTTGCCTCCATTCTCAACACATCTTTATACAATTTACCACCCCAATTCAACTACCCTTCTCTTTCTGGAATTGGAAGATCAGTGATAAACCCAAGCCATATGCTAAGTTTGCTCACTACCCTGCTATCATGTCAAAACAGAAATTACAACCCTGATGTATTGAATAATAACCAACTTAGTGACAGTGACACTTTATTGCAAAATCAACCCCAATGTTCCCAAATGCAACTTGATTCTATACAAGCCTTCCAACCAAACCAACCCCATGTCTCACTTCAAGAAAACCATATTGCTAAGTCTAATTCCAATCCATTGAATATGGAATCCCAAGTTATGAAAACTAAATTAGAGAATCACATCATTCCAATTGCTACCCTTTTTAGCCACCAAAACACACTACCAAATTTGTGGCTCTATAATAGTGAAGGTCACATATCTGATCTACCAACAATGGCCCAATCATCATCAGCTATGCAACGTTTCTCTTCTCCCAAGTTCAACTCTATATACAACAATAATCTCTTGGAAAATCAGAATTTGTGTAACAACAACGAGGGGGCGCCAAATTTCAATTTAAGTTCACTGTTATCGTCCACACCCTCATCTTCTAGCCCAATTAGTACTTTGAATTCATCATCTTCCGCGACATTTGTCAACGGAACCACTGAAGATGAAAGGGACACTTATGGCAGCAACATGTTATTGATGTATAACATTTCAAATGGCTTGAATGACTCTGGACTTTTGTGA 1149 0.3977 MAKSSSEKNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVLQLASILNTSLYNLPPQFNYPSLSGIGRSVINPSHMLSLLTTLLSCQNRNYNPDVLNNNQLSDSDTLLQNQPQCSQMQLDSIQAFQPNQPHVSLQENHIAKSNSNPLNMESQVMKTKLENHIIPIATLFSHQNTLPNLWLYNSEGHISDLPTMAQSSSAMQRFSSPKFNSIYNNNLLENQNLCNNNEGAPNFNLSSLLSSTPSSSSPISTLNSSSSATFVNGTTEDERDTYGSNMLLMYNISNGLNDSGLL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02057 382 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gma12g02057 382 MobiDBLite consensus disorder prediction 336 356 - -
Gma12g02057 382 SMART sant 12 62 IPR001005 -
Gma12g02057 382 SMART sant 65 113 IPR001005 -
Gma12g02057 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 367 - -
Gma12g02057 382 CDD SANT 68 111 IPR001005 -
Gma12g02057 382 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 367 - -
Gma12g02057 382 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gma12g02057 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gma12g02057 382 CDD SANT 15 60 IPR001005 -
Gma12g02057 382 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gma12g02057 382 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Gma12g02057 382 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gma12g02057 382 Gene3D - 10 66 - -
Gma12g02057 382 Gene3D - 68 115 - -
Gma12g02057 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02057 Gma-Chr12 41258513 41261284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02057 1 144 MYB Transcription Factor Family AT4G21440 83.448 3.60e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g02057 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02057 K09422 - gmx:547460 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02057 12 41258513 41261284 Gma12g02057 12 41258513 41261284 ECH