Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02056 ATGGAAATCTCTAATATCAACTATCAACTGCCACAGCATAAAAAACTTATTATAGATGCTGGAGCCTTGCCCTGTCTCGTAGATTTGTTAAGAAGGCACAAGAGCTGTCCCATTTGTAGTCCACTTGTTGGTCTTCTAAGGATAGTAGCTAATGCAATATGCTATCTTGCCTCTGATAATACCAACATTAAGACTCTTGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGGTTGAATTCAATGTCACAGAGTTACAGAAAGCAGTTGCATCGGGGTTGGCAACTCTTGCATATGATAATCATGACAATAAAAAACAGGTTCATATTATCCAAAGAGGGGTTATTCCACAATTACTTGACATGCTTAATAGTCATGGGGAAATGGCGGTTTTTGCACTTGGGAGTTTGGCACCGGAATCACATAATCAAGCTATTATTGCTCATAACGGAGGTATAGAGCCTCTGCTCACTATGCTTGACTCAAACGAGGCTGCCCTCCAACATCAAGCTGTTTTATCTCTCTATGGTCTTGCTGATAATGAGCTTGCGGATTTTATCGAGGCTGGTGGTTTTCAGAAACTAAAGGATGGACATTTCAAATATCAATGCCGCCGCTGCACGCCCGCACCTGCGTCCTGCTCCGACACTCCGGCGATTGTGATCACCGCCGGAAAACACCGCGGTCCCACTCCCAACACCGCGCAGAGCAATCTCCTCCGCTGTCAACATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAAAGGTGGCAAAGTCATAAAGTGCGGGAGCACTACCTGCGCGACGATATATACTGCGGCGCACCGTTTTGCACCGTTTGCGATTCTTCCAGTGCTCGCCTCAGTGCTTCGCCTTCCACCATTCTCGTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCGATTGACGATGTTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGTCTGTTTACAACCGTATAAGAGCTATCTGTAGCCATTCCATGAGGAAGTTCTTTGTTTTTTCCAATGAATACCACAGGGATACATATATTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATTCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTGTTGCTTATAACTAATGACAAAGAGAACAAAAGGAAGGCTAGTGAAGAGGGCATTTTGGCCGAAACAGTTGAGTCATATGTGAAGTCTTTGGACCAACCTGATTTACTTGATCTGCTTGTGCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTACTCCGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAACTTCGTGTTAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATCGGTGATGAAATAATTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGGGATATTGAAGCAGCTGAACTTCTGCCTCAGGACCAGTGGCAAGGAGTCTCATCTCTATCTATAGCCCATGAAGAAGACGAGGATGAGGATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAACTATTCCTCAGCTGGGTTCTTCTGAACAAGTAAATGCTGTGCCCAGTCGTCCTTCTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACCCGTCAAGTTGAGAACCTTTTGGATAAGAGGATTATTGTGGATGTTGATTCTTGGGATTGTCAGTCTCGATATCCATCAGGCCATTGTGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGCGAGCTCGACTTGGAAGCAATATCTTATAGCTTCAAGCTCCCTTTCATCAGGCATGGGGAACTCAGTGGTTTGGGAATTCATGGTCAGAAATAA 2118 0.4443 MEISNINYQLPQHKKLIIDAGALPCLVDLLRRHKSCPICSPLVGLLRIVANAICYLASDNTNIKTLVRMEGGIPPLVELVEFNVTELQKAVASGLATLAYDNHDNKKQVHIIQRGVIPQLLDMLNSHGEMAVFALGSLAPESHNQAIIAHNGGIEPLLTMLDSNEAALQHQAVLSLYGLADNELADFIEAGGFQKLKDGHFKYQCRRCTPAPASCSDTPAIVITAGKHRGPTPNTAQSNLLRCQHAPQQVLRQENQRWQSHKVREHYLRDDIYCGAPFCTVCDSSSARLSASPSTILVVDTNVVLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSHSMRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESYVKSLDQPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIEAAELLPQDQWQGVSSLSIAHEEDEDEDEDVHLAPNSADDAPRTIPQLGSSEQVNAVPSRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQVENLLDKRIIVDVDSWDCQSRYPSGHCVRTIGEIGDRDTESELDLEAISYSFKLPFIRHGELSGLGIHGQK 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02056 705 MobiDBLite consensus disorder prediction 542 580 - -
Gma12g02056 705 SUPERFAMILY PIN domain-like 295 429 IPR029060 -
Gma12g02056 705 Pfam PIN domain 297 420 IPR002716 -
Gma12g02056 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 21 71 IPR000225 GO:0005515
Gma12g02056 705 Pfam Armadillo/beta-catenin-like repeat 11 47 IPR000225 GO:0005515
Gma12g02056 705 SUPERFAMILY ARM repeat 2 196 IPR016024 -
Gma12g02056 705 SMART arm_5 10 51 IPR000225 GO:0005515
Gma12g02056 705 SMART arm_5 141 181 IPR000225 GO:0005515
Gma12g02056 705 SMART arm_5 59 100 IPR000225 GO:0005515
Gma12g02056 705 PANTHER RIBONUCLEASE 251 677 - -
Gma12g02056 705 Gene3D - 253 435 - -
Gma12g02056 705 Gene3D - 2 198 IPR011989 -
Gma12g02056 705 CDD PIN_Rrp44-like 263 423 - -
Gma12g02056 705 MobiDBLite consensus disorder prediction 564 579 - -
Gma12g02056 705 Gene3D - 594 669 - -
Gma12g02056 705 Pfam Rrp44-like cold shock domain 462 550 IPR033771 -
Gma12g02056 705 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 251 677 - -
Gma12g02056 705 Gene3D - 450 555 - -
Gma12g02056 705 SUPERFAMILY Nucleic acid-binding proteins 458 666 IPR012340 -
Gma12g02056 705 SMART PIN_9 295 408 IPR002716 -
Gma12g02056 705 Pfam Dis3-like cold-shock domain 2 (CSD2) 616 676 IPR041505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02056 Gma-Chr12 41239912 41251870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02056 11 156 U-box Gene Family AT5G42340 29.801 2.09e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02056 K12585 - gmx:100806652 799.66