LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g02056	ATGGAAATCTCTAATATCAACTATCAACTGCCACAGCATAAAAAACTTATTATAGATGCTGGAGCCTTGCCCTGTCTCGTAGATTTGTTAAGAAGGCACAAGAGCTGTCCCATTTGTAGTCCACTTGTTGGTCTTCTAAGGATAGTAGCTAATGCAATATGCTATCTTGCCTCTGATAATACCAACATTAAGACTCTTGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGGTTGAATTCAATGTCACAGAGTTACAGAAAGCAGTTGCATCGGGGTTGGCAACTCTTGCATATGATAATCATGACAATAAAAAACAGGTTCATATTATCCAAAGAGGGGTTATTCCACAATTACTTGACATGCTTAATAGTCATGGGGAAATGGCGGTTTTTGCACTTGGGAGTTTGGCACCGGAATCACATAATCAAGCTATTATTGCTCATAACGGAGGTATAGAGCCTCTGCTCACTATGCTTGACTCAAACGAGGCTGCCCTCCAACATCAAGCTGTTTTATCTCTCTATGGTCTTGCTGATAATGAGCTTGCGGATTTTATCGAGGCTGGTGGTTTTCAGAAACTAAAGGATGGACATTTCAAATATCAATGCCGCCGCTGCACGCCCGCACCTGCGTCCTGCTCCGACACTCCGGCGATTGTGATCACCGCCGGAAAACACCGCGGTCCCACTCCCAACACCGCGCAGAGCAATCTCCTCCGCTGTCAACATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAAAGGTGGCAAAGTCATAAAGTGCGGGAGCACTACCTGCGCGACGATATATACTGCGGCGCACCGTTTTGCACCGTTTGCGATTCTTCCAGTGCTCGCCTCAGTGCTTCGCCTTCCACCATTCTCGTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCGATTGACGATGTTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGTCTGTTTACAACCGTATAAGAGCTATCTGTAGCCATTCCATGAGGAAGTTCTTTGTTTTTTCCAATGAATACCACAGGGATACATATATTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATTCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTGTTGCTTATAACTAATGACAAAGAGAACAAAAGGAAGGCTAGTGAAGAGGGCATTTTGGCCGAAACAGTTGAGTCATATGTGAAGTCTTTGGACCAACCTGATTTACTTGATCTGCTTGTGCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTACTCCGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAACTTCGTGTTAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATCGGTGATGAAATAATTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGGGATATTGAAGCAGCTGAACTTCTGCCTCAGGACCAGTGGCAAGGAGTCTCATCTCTATCTATAGCCCATGAAGAAGACGAGGATGAGGATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAACTATTCCTCAGCTGGGTTCTTCTGAACAAGTAAATGCTGTGCCCAGTCGTCCTTCTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACCCGTCAAGTTGAGAACCTTTTGGATAAGAGGATTATTGTGGATGTTGATTCTTGGGATTGTCAGTCTCGATATCCATCAGGCCATTGTGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGCGAGCTCGACTTGGAAGCAATATCTTATAGCTTCAAGCTCCCTTTCATCAGGCATGGGGAACTCAGTGGTTTGGGAATTCATGGTCAGAAATAA	2118	0.4443	MEISNINYQLPQHKKLIIDAGALPCLVDLLRRHKSCPICSPLVGLLRIVANAICYLASDNTNIKTLVRMEGGIPPLVELVEFNVTELQKAVASGLATLAYDNHDNKKQVHIIQRGVIPQLLDMLNSHGEMAVFALGSLAPESHNQAIIAHNGGIEPLLTMLDSNEAALQHQAVLSLYGLADNELADFIEAGGFQKLKDGHFKYQCRRCTPAPASCSDTPAIVITAGKHRGPTPNTAQSNLLRCQHAPQQVLRQENQRWQSHKVREHYLRDDIYCGAPFCTVCDSSSARLSASPSTILVVDTNVVLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSHSMRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESYVKSLDQPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIEAAELLPQDQWQGVSSLSIAHEEDEDEDEDVHLAPNSADDAPRTIPQLGSSEQVNAVPSRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQVENLLDKRIIVDVDSWDCQSRYPSGHCVRTIGEIGDRDTESELDLEAISYSFKLPFIRHGELSGLGIHGQK	705

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g02056	705	MobiDBLite	consensus disorder prediction	542	580	-	-
	Gma12g02056	705	SUPERFAMILY	PIN domain-like	295	429	IPR029060	-
	Gma12g02056	705	Pfam	PIN domain	297	420	IPR002716	-
	Gma12g02056	705	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	21	71	IPR000225	GO:0005515
	Gma12g02056	705	Pfam	Armadillo/beta-catenin-like repeat	11	47	IPR000225	GO:0005515
	Gma12g02056	705	SUPERFAMILY	ARM repeat	2	196	IPR016024	-
	Gma12g02056	705	SMART	arm_5	10	51	IPR000225	GO:0005515
	Gma12g02056	705	SMART	arm_5	141	181	IPR000225	GO:0005515
	Gma12g02056	705	SMART	arm_5	59	100	IPR000225	GO:0005515
	Gma12g02056	705	PANTHER	RIBONUCLEASE	251	677	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g02056	Gma-Chr12	41239912	41251870	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g02056	11	156	U-box Gene Family	AT5G42340	29.801	2.09e-06	49.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g02056	K12585		-	gmx:100806652	799.66

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