LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g02029	ATGGCAATTCAACAATATATGGGTAATGGTATCATAAAGGTTATCTTTTGCATCATTTTGACTTTTAATATTATGGCAATAGTCAGCATTGAAGAGAAGAAAACTCAAGAAGAATTCATTAGCCAACTATTTGATCCAACATCTGGACTATTAACTGAGGACACGGCAGAGGTACTATGGATCACTTGCTGGGAAGATTTTATTCATTTAAAGAAAGAAGTTGGAGATCTTGACTTATGCCTCCCAAAGGAATCATACAGAAAAACCAATGAAATTAGTTCAGAAATTGGTTCAATAGCCAGAGAAAACATCCAAAAATTGATTAGTTCATGTTATCCTCACTTAAAGGAAAATGTTCTTCATTGTTTGAGAAAAAATAATTTTCCATTCAATGCTCTCAAGGAAGAGGGTGACTCCAAGATTTGGCATGTCACTTACATGGGATCACTTTCTTCTAGAAGATATTTGGGTCAAGTTTTTCCCCAGCACGTATCAGAAATATCAATCAAGGAAGATGAATCACCTAAAAAGAACAAGCCTAAGGAAAAAGACTCTAATAAAAAAGACAAAAAGAAGTCGAAGTCTTCTGGCTCAAAGGATAAAAACAAAAACACATCTATGGCTATAACTATAATAGTGACAATTTTAGTTGCAGCATTGCTCTTTTTATGTTGTGGGAGTGGTCGAGTTAGACAAAATGATGAGAGGCCCCTTCTCAGCATGAGCATGAATGACTACTCAGTTGGTTCTTCTTCCAATAATAATCCATACAAAAATTCAATGAAAGAGGAGAAAATTGGGTTTCAATCATCAAGTAATACATTGGTTGATGACAGGAAGAACTCAATGATGGAAACTCAATTAGCAGGAGTTGCTGCTAGTGCTGCTACAAGACCATCATTTGAATTAAAGCCTCCTCCTGGGAGAGTAGCAAACAATGGAGTGCTTCCTTTGAAACCTCCTCCTGGAAGGCCTGATCTTCTTCCTCATGAGTCATGTTCAATTAAGCCTTTTGATAATTCCATTGTtcctcctccttctcctcctcctccttctcctcctcctcctcctcctcctACACCACCAAAGCCTAATAGTGCTGGCCCTCCACCTCCTCCACCTCCTAGCAATGGCCCTAGAGCTCCTCCACCACCACCACTTAGAGGCAAGCCTGGCCCTAGACCTTCACCACCTCCTAGAGTTGGTGGAGGTCCTCCAAGAACAACACCCCCTTTTGGTTCAAAGGTTGCTAAGACTCAGGAAGAAGTTGGAGTCAATTCTGAAGGTGAAGTTAATGCTACTAATAAAGCTAAGCTAAAGCCTTTTTTCTGGGATAAGGTTCAAGCTAACTCAGATCAAACAATGGTCTGGAATCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAGACGCTTTTTTGCTATAATACTACGCCTGTGGAAAAAAGCAAAGGGCAACAAAAGAAAGAGGCTTCCTCCCCGTCAGCTTCACCTCAATATATACAGATCATTAACTCAAAGAAATCACAAAATTTATCTATTTTATTAAAAGCATTGAATGTGACAATAGAAGAAGTTTCTGAGGCACTTCTTGAAGGAAATGAGCTCCCCACAGAATTCCTTCAAACCTTATTGAAGATGGCACCAACATCAGAGGAAGAACTTAAGCTTAGACTTTTCAATGGTAATTTAGCCCAACTTGGGCCTGCAGATAGGTTCCTAAAAGCCCTAGTTGACATTCCATTTGCTTTTAAACGAATGGAAGCACTACTTTACATGGGTATTCTTCAAGAAGAACTCACTGGTACTCGAGAATCTTTTGCAATTTTAGAGGTTGCTTGCAAAACGCTGAGAAGCAGTAGATTGTTCCTCAAGCTTCTTGAAGCCGTTCTCAAAACCGGCAACCGTATGAACGATGGAACGTTCCGTGGCGGCGCACAAGCATTCAAACTCGACACACTGCTGAAACTATCTGATGTAAAAGGAGTAGATGGCAAGACCACTCTCCTACACTTCGTAGTTCAAGAGATAATGCGAACCGAGGGCATAAGAGCTGCACGCATGGCAAAAGAGAACCACAGTTTCTCTAGTATAAAATCGGAGGACCTTCTTGAAGACATTTCTTATGAATCAGAAGACCAATACCGCGAACTTGGTCTTCAAGTGGTTTCACGTTTGAGCAGTGAACTCGAGAATGTGAAGAAAGCAGCAGCTTTAGATGCTGATGGATTAATAGGAACAACTTCTAGACTAGGCCATGGACTCATAAAAACAAGAGATTTTGTAAACAAAGACCTAAGTAACATAGATGATGACAAAGGCTTTCATGAGACAGTGAAGAGTTTTGTGGAGAAAGCTGAGGCTGATGTCACGAGTTTACTAGAAGAAGAGAAGAAAATCATGGCCCTAGTCAAGAACACTGGTGATTACTTTCATGGGGACTCAGGGAAGGATGAAGGGTTGAGGTTGTTTGTAATAGTACGTGATTTCTTAGTAATGTTGGATAAGGTGTGCAAGGAGATTCAAAATGGACCAAAGAAGCCTGTAGCCAAAAATGTGAAGAGAGAAGCTTCTAATCATTCTAGAAAGTCGTCTTCCTCCGAAATTCATCCTCTTCCTCCTGATATTCGTCAGAGAATTTTTCCAGCAGTAGTGGCTAATAGAAGGATGGATGGCTTTAGTTCAGATGATGAGAGTCCTTAA	2712	0.3916	MAIQQYMGNGIIKVIFCIILTFNIMAIVSIEEKKTQEEFISQLFDPTSGLLTEDTAEVLWITCWEDFIHLKKEVGDLDLCLPKESYRKTNEISSEIGSIARENIQKLISSCYPHLKENVLHCLRKNNFPFNALKEEGDSKIWHVTYMGSLSSRRYLGQVFPQHVSEISIKEDESPKKNKPKEKDSNKKDKKKSKSSGSKDKNKNTSMAITIIVTILVAALLFLCCGSGRVRQNDERPLLSMSMNDYSVGSSSNNNPYKNSMKEEKIGFQSSSNTLVDDRKNSMMETQLAGVAASAATRPSFELKPPPGRVANNGVLPLKPPPGRPDLLPHESCSIKPFDNSIVPPPSPPPPSPPPPPPPTPPKPNSAGPPPPPPPSNGPRAPPPPPLRGKPGPRPSPPPRVGGGPPRTTPPFGSKVAKTQEEVGVNSEGEVNATNKAKLKPFFWDKVQANSDQTMVWNQLKAGSFQFNEEMMETLFCYNTTPVEKSKGQQKKEASSPSASPQYIQIINSKKSQNLSILLKALNVTIEEVSEALLEGNELPTEFLQTLLKMAPTSEEELKLRLFNGNLAQLGPADRFLKALVDIPFAFKRMEALLYMGILQEELTGTRESFAILEVACKTLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIMRTEGIRAARMAKENHSFSSIKSEDLLEDISYESEDQYRELGLQVVSRLSSELENVKKAAALDADGLIGTTSRLGHGLIKTRDFVNKDLSNIDDDKGFHETVKSFVEKAEADVTSLLEEEKKIMALVKNTGDYFHGDSGKDEGLRLFVIVRDFLVMLDKVCKEIQNGPKKPVAKNVKREASNHSRKSSSSEIHPLPPDIRQRIFPAVVANRRMDGFSSDDESP	903

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g02029	903	MobiDBLite	consensus disorder prediction	341	406	-	-
	Gma12g02029	903	Pfam	Formin Homology 2 Domain	434	837	IPR015425	-
	Gma12g02029	903	MobiDBLite	consensus disorder prediction	167	202	-	-
	Gma12g02029	903	Gene3D	Formin, FH2 domain	435	872	IPR042201	-
	Gma12g02029	903	MobiDBLite	consensus disorder prediction	848	879	-	-
	Gma12g02029	903	MobiDBLite	consensus disorder prediction	852	866	-	-
	Gma12g02029	903	SMART	it6_source	428	852	IPR015425	-
	Gma12g02029	903	PANTHER	FORMIN-LIKE PROTEIN	189	901	-	-
	Gma12g02029	903	PANTHER	FORMIN-LIKE PROTEIN	1	163	-	-
	Gma12g02029	903	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	429	863	IPR015425	-
	Gma12g02029	903	MobiDBLite	consensus disorder prediction	296	430	-	-
	Gma12g02029	903	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	370	846	-	-
	Gma12g02029	903	MobiDBLite	consensus disorder prediction	167	199	-	-
	Gma12g02029	903	PANTHER	FORMIN-RELATED	189	901	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Gma12g02029	903	PANTHER	FORMIN-RELATED	1	163	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g02029	Gma-Chr12	40926338	40930840	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g02029	411	844	FH2 protein (formin) Gene Family	AT3G25500	48.753	4.24e-120	389

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g02029	-		-	gmx:100792872	970.689

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma12g02029	12	40926338	40930840	Gma12g02029	12	40926338	40930840	ECH
	Gma13g02528	13	40174931	40179341	Gma12g02029	12	40926338	40930840	GST
	Gma12g02029	12	40926338	40930840	Gma12g01234	12	16432811	16440147	PCT
	Gma12g02029	12	40926338	40930840	Gma06g02454	06	46843956	46851031	PCT
	Gma12g01234	12	16432811	16440147	Gma12g02029	12	40926338	40930840	PCT
	Gma06g02454	06	46843956	46851031	Gma12g02029	12	40926338	40930840	PCT